View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_47 (Length: 219)
Name: NF3593_low_47
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_47 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 32528595 - 32528764
Alignment:
| Q |
1 |
gtgcttagatatgtgaaaggaacatgtgactttggcattaaattttccaaaagcaatgaattcaagctgattggtttttcagacagcgattggggaggtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528595 |
gtgcttagatatgtgaaaggaacatgtgactttggcattaaatttatcaaaagcaatgaattcaagctgattggtttttcagacagcgattggggaggtt |
32528694 |
T |
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| Q |
101 |
ctgctgatgatatgaaaagcacttctggctatattttcacacttggttctagtgttttctcttggagttc |
170 |
Q |
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| T |
32528695 |
ctgctgatgatatgaaaagcacttctggctattgtttcacacttggttctagtgttttctcttggagttc |
32528764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 26344800 - 26344969
Alignment:
| Q |
1 |
gtgcttagatatgtgaaaggaacatgtgactttggcattaaattttccaaaagcaatgaattcaagctgattggtttttcagacagcgattggggaggtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
26344800 |
gtgcttagatatgtgaaaggaacatgtgactttggcattaaatttaccaaaagcaatgaattcaagctgattggtttttcaaacagcgattgaggaggtt |
26344899 |
T |
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| Q |
101 |
ctgctgatgatatgaaaagcacttctggctatattttcacacttggttctagtgttttctcttggagttc |
170 |
Q |
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| T |
26344900 |
ctgctgatgatatgaaaagcacttctggctattgtttcacacttggttctagtgttttctcttggagttc |
26344969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 28394382 - 28394600
Alignment:
| Q |
1 |
gtgcttagatatgtgaaaggaacatgtgactttggcattaaattttccaaaagcaatgaattcaagctgattggtttttcagacagcgattggggaggtt |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28394382 |
gtgcttagatatatgaaaggaacatgtgactttggcattaaatttaccaaaagcaatgaattcaagctgattggtttttcagacagcgattggggaggtt |
28394481 |
T |
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| Q |
101 |
ctgctgatgatatgaaaagcacttctggctatattttcacacttggttctagtgttttctcttggagttcnnnnnnnnnnnnnncagtggctcaatcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28394482 |
ctgctgatgatatgaaaagcacttctggctattgtttctcactaggttctagtgttttctcttggagttcgaaaaaacaagaaacagtggctcaatcaac |
28394581 |
T |
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| Q |
201 |
ttccgaagcggagtttatt |
219 |
Q |
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| T |
28394582 |
tgccgaagcggagtttatt |
28394600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 6831777 - 6831689
Alignment:
| Q |
82 |
gacagcgattggggaggttctgctgatgatatgaaaagcacttctggctatattttcacacttggttctagtgttttctcttggagttc |
170 |
Q |
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| T |
6831777 |
gacagcaattggggaggttctgctgatgatatgaaaagcacttctggctattgtttcacacttggttctagtgttttctcttggagttc |
6831689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 43373144 - 43373287
Alignment:
| Q |
26 |
gtgactttggcattaaattttccaaaagcaatgaattcaagctgattggtttttcagacagcgattggggaggttctgctgatgatatgaaaagcacttc |
125 |
Q |
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|||| ||||||||||||||| | || |||| ||||||||||| |||||||||| ||| |||||||| ||||||| |||||||||||||||| ||| |
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| T |
43373144 |
gtgattttggcattaaatttactaagagcagagaattcaagctaattggttttttagatagcgattgaggaggtttcattgatgatatgaaaagcgcttt |
43373243 |
T |
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| Q |
126 |
tggctatattttcacacttggttctagtgttttctcttggagtt |
169 |
Q |
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| T |
43373244 |
ggactattgttttacacttggttatggcatttactcttggagtt |
43373287 |
T |
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