View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3593_low_5 (Length: 531)

Name: NF3593_low_5
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3593_low_5
NF3593_low_5
[»] chr8 (9 HSPs)
chr8 (151-385)||(10501710-10501961)
chr8 (278-386)||(1487575-1487683)
chr8 (245-301)||(5035185-5035241)
chr8 (278-383)||(10500953-10501058)
chr8 (336-384)||(1488486-1488534)
chr8 (324-384)||(39656902-39656962)
chr8 (283-382)||(31694164-31694263)
chr8 (259-350)||(40449505-40449596)
chr8 (259-313)||(39852225-39852279)
[»] chr3 (16 HSPs)
chr3 (259-384)||(11267609-11267734)
chr3 (405-453)||(35188854-35188902)
chr3 (259-341)||(8653643-8653725)
chr3 (245-301)||(36750128-36750185)
chr3 (245-301)||(52492187-52492244)
chr3 (274-348)||(46740503-46740577)
chr3 (487-523)||(35188787-35188823)
chr3 (322-384)||(32355864-32355926)
chr3 (338-384)||(50306525-50306571)
chr3 (259-316)||(8427284-8427341)
chr3 (259-348)||(35458883-35458971)
chr3 (271-384)||(50305403-50305516)
chr3 (336-385)||(50305619-50305668)
chr3 (344-385)||(51491708-51491749)
chr3 (352-384)||(42147564-42147596)
chr3 (278-354)||(47481183-47481259)
[»] chr4 (7 HSPs)
chr4 (245-348)||(23383346-23383449)
chr4 (259-384)||(5825334-5825456)
chr4 (245-295)||(39523180-39523230)
chr4 (279-340)||(31634762-31634823)
chr4 (278-342)||(20350380-20350444)
chr4 (259-348)||(54453489-54453577)
chr4 (245-300)||(36451335-36451391)
[»] chr5 (5 HSPs)
chr5 (266-384)||(6353684-6353802)
chr5 (245-301)||(33002015-33002071)
chr5 (279-342)||(16970976-16971039)
chr5 (341-384)||(30002864-30002907)
chr5 (269-385)||(1282253-1282369)
[»] scaffold0041 (1 HSPs)
scaffold0041 (245-301)||(27304-27360)
[»] chr1 (14 HSPs)
chr1 (269-387)||(4125350-4125468)
chr1 (259-384)||(13536281-13536406)
chr1 (266-326)||(193908-193968)
chr1 (245-293)||(12925964-12926012)
chr1 (279-342)||(45064728-45064791)
chr1 (338-384)||(3788435-3788481)
chr1 (259-340)||(27418207-27418289)
chr1 (246-299)||(6076059-6076112)
chr1 (336-384)||(3789338-3789386)
chr1 (352-384)||(15374713-15374745)
chr1 (245-293)||(17050544-17050592)
chr1 (259-299)||(31390746-31390786)
chr1 (268-348)||(43316393-43316473)
chr1 (245-300)||(47334283-47334339)
[»] chr7 (10 HSPs)
chr7 (245-301)||(38072199-38072256)
chr7 (336-384)||(9378729-9378777)
chr7 (245-301)||(4261288-4261345)
chr7 (274-386)||(9379732-9379845)
chr7 (245-301)||(7677718-7677774)
chr7 (278-354)||(30402795-30402871)
chr7 (279-342)||(29315254-29315317)
chr7 (324-386)||(3820392-3820454)
chr7 (278-348)||(30915770-30915840)
chr7 (259-299)||(41195289-41195329)
[»] chr2 (10 HSPs)
chr2 (304-385)||(5504343-5504424)
chr2 (279-355)||(16427230-16427306)
chr2 (259-354)||(36391595-36391690)
chr2 (279-332)||(40992878-40992931)
chr2 (322-384)||(5505206-5505268)
chr2 (322-384)||(6182092-6182154)
chr2 (278-384)||(9370958-9371064)
chr2 (338-384)||(26021913-26021959)
chr2 (336-385)||(26021007-26021056)
chr2 (259-299)||(4478936-4478976)
[»] scaffold0180 (1 HSPs)
scaffold0180 (274-348)||(22178-22252)
[»] scaffold0016 (1 HSPs)
scaffold0016 (352-384)||(67247-67279)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 151 - 385
Target Start/End: Original strand, 10501710 - 10501961
Alignment:
Q  151 gaaatctcattagatttggataataaataaataaatttaactattgtttgtgaggaagataacaaggttgaagaagataatgtgtttt------------ 238  Q
    ||||| ||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||                
T  10501710 gaaatttcattagatttggataataaataaat----ttaactattgtttgtgaggaatataacaaggttgaagaagacaatgtgttttggtggtggtgat 10501805  T
Q  239 ----------ggcggtgagagagggttgatgatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggta 328  Q
              || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||     
T  10501806 ggtggtgaccggtggtgagagagggttgatgatagtgtaaaaaataatctagtgttgagg-agtatgataagagcatgttcttcatttgatccaatggtc 10501904  T
Q  329 aaaaattactttcctatggtagaaaaatctttccccttcacaccctaaatgccacca 385  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  10501905 aaaaattactttcccatggtagaaaaatcttttcccttcccaccctaaatgccacca 10501961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 386
Target Start/End: Complemental strand, 1487683 - 1487575
Alignment:
Q  278 tagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatctttccccttcacaccctaaa 377  Q
    |||||||||| | ||||||||| || |||| ||| |||| ||| |||||| ||||   ||||||||||| ||| ||| ||||||||||||  ||| ||||    
T  1487683 tagtgttgagagtgtatgataatagtatgtacttgatttaatttaatggttaaaatcaactttcctatgataggaaactctttccccttcctaccttaaa 1487584  T
Q  378 tgccaccat 386  Q
    |||||||||    
T  1487583 tgccaccat 1487575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 5035185 - 5035241
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagtgttgagggagtatgataaga 301  Q
    |||||||||| || |||||||||||| ||||| |||||||||| |||||||||||||    
T  5035185 gagagagggtggaagatagtgtaaaacataatttagtgttgagagagtatgataaga 5035241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 383
Target Start/End: Complemental strand, 10501058 - 10500953
Alignment:
Q  278 tagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatctttccccttcacaccctaaa 377  Q
    |||||||||| ||||||| ||| | |||| ||||||||| ||  ||   | |||||| ||||||| ||||| ||||||||||| || ||| |||||||||    
T  10501058 tagtgttgagagagtatggtaatatcatggtcttcatttaatcgaacattcaaaaatcactttcccatggtggaaaaatcttttccattcccaccctaaa 10500959  T
Q  378 tgccac 383  Q
    ||||||    
T  10500958 tgccac 10500953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 1488486 - 1488534
Alignment:
Q  336 actttcctatggtagaaaaatctttccccttcacaccctaaatgccacc 384  Q
    ||||||||||||| ||||| |||||||||||| || |||||||||||||    
T  1488486 actttcctatggtggaaaactctttccccttcccatcctaaatgccacc 1488534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 39656902 - 39656962
Alignment:
Q  324 tggtaaaaaattactttcctatggtagaaaaatctttccccttcacaccctaaatgccacc 384  Q
    ||||||||||  |||||||||| |||| ||| |||||||||| | ||||||||||||||||    
T  39656902 tggtaaaaaaaaactttcctatagtaggaaactctttcccctacccaccctaaatgccacc 39656962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 382
Target Start/End: Complemental strand, 31694263 - 31694164
Alignment:
Q  283 ttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatctttccccttcacaccctaaatgcca 382  Q
    |||| ||||||| |||||||  ||| |||||||||||  ||| || |||  | ||||||||||||| | |||||||| ||||| | ||||||||||||||    
T  31694263 ttgacggagtataataagagtgtgtacttcatttgatctaatcgttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatgcca 31694164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 40449596 - 40449505
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtag 350  Q
    |||||||||  ||||||||||||||||||||| ||  |||||||   |||| |||||| ||| |||||| |||| ||||||| | |||||||    
T  40449596 gatagtgtaggaaataatctagtgttgagggaataaaataagagtgcgttcctcatttaatttaatggttaaaatttacttttccatggtag 40449505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 39852279 - 39852225
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttca 313  Q
    |||||||| ||||| |||||||||||||||||| ||| |||||  ||||||||||    
T  39852279 gatagtgtgaaaaaaaatctagtgttgagggagcatgttaagaatatgttcttca 39852225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 11267609 - 11267734
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatct 358  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||| ||| |||| |||| ||  |||||| |||| ||| ||||| ||||||| ||| |||    
T  11267609 gatagtgtaaaaaataatatagtggtgatggagtatgataagagtatgctctttatttaatctaatggttaaaatttattttcccatggtaggaaattct 11267708  T
Q  359 ttccccttcacaccctaaatgccacc 384  Q
    |||||   | ||||||||||||||||    
T  11267709 ttccctcacccaccctaaatgccacc 11267734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 405 - 453
Target Start/End: Complemental strand, 35188902 - 35188854
Alignment:
Q  405 tatgtgctctcattgaccattcgcagttattaacggtcaacattttccc 453  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  35188902 tatgtgctctcattgaccattcgcagttattaacattcaacattttccc 35188854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 8653643 - 8653725
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttc 341  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||  ||||  |||||||||  |||||| |||| ||||||||    
T  8653643 gatagtgtagaaaatgatctagtgttgagggaatatgataagagtgtgtttctcatttgatcaaatggttaaaatttactttc 8653725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 36750185 - 36750128
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagt-gttgagggagtatgataaga 301  Q
    |||||||||| || ||||||||||||||||||||||| |||||| |||||||||||||    
T  36750185 gagagagggtggaagatagtgtaaaaaataatctagtggttgagagagtatgataaga 36750128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 52492187 - 52492244
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagt-gttgagggagtatgataaga 301  Q
    |||||||||| || ||||||||||||||||||||||| |||||| |||||||||||||    
T  52492187 gagagagggtggaagatagtgtaaaaaataatctagtggttgagagagtatgataaga 52492244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 46740503 - 46740577
Alignment:
Q  274 aatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggt 348  Q
    |||||| ||||||||||||||||||||||  |||| ||||||| || ||||| | |||| ||||||||| |||||    
T  46740503 aatctaatgttgagggagtatgataagagtgtgtttttcatttaatccaatgattaaaacttactttcccatggt 46740577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 523
Target Start/End: Complemental strand, 35188823 - 35188787
Alignment:
Q  487 gtcaaagatattcaacatttttcttttagtctgtgct 523  Q
    |||||||||||||||||||||||||||||| ||||||    
T  35188823 gtcaaagatattcaacatttttcttttagtttgtgct 35188787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 32355926 - 32355864
Alignment:
Q  322 aatggtaaaaaattactttcctatggtagaaaaatctttccccttcacaccctaaatgccacc 384  Q
    |||||| ||||  |||||||||||||| |||||||||||||| | | ||||||||||| ||||    
T  32355926 aatggtcaaaacctactttcctatggtggaaaaatctttcccttacccaccctaaatgtcacc 32355864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 50306525 - 50306571
Alignment:
Q  338 tttcctatggtagaaaaatctttccccttcacaccctaaatgccacc 384  Q
    ||||||||||| | ||| |||||||||||| ||||||||||||||||    
T  50306525 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 50306571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 8427341 - 8427284
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttcattt 316  Q
    |||||||| || || |||||||||||||| ||| |||||||||  |||||||||||||    
T  8427341 gatagtgtgaagaaaaatctagtgttgagagagcatgataagaatatgttcttcattt 8427284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 348
Target Start/End: Complemental strand, 35458971 - 35458883
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggt 348  Q
    ||||||||||||  |||||||||||||| ||||||||||||||   ||||||| |||| ||  |||||   ||| |||||||||||||||    
T  35458971 gatagtgtaaaat-taatctagtgttgaaggagtatgataagaaagtgttctttatttaatcaaatggattaaatttactttcctatggt 35458883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 384
Target Start/End: Original strand, 50305403 - 50305516
Alignment:
Q  271 aataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatctttccccttcaca 370  Q
    |||||| ||||||| | ||||||||||||||| ||| ||||||||  ||  |||||| |||| ||||||| | ||||| | ||| ||||| ||   | ||    
T  50305403 aataatatagtgttcatggagtatgataagagtatgctcttcattcaatctaatggttaaaatttacttttccatggtgggaaattcttttcctcaccca 50305502  T
Q  371 ccctaaatgccacc 384  Q
    ||||||||||||||    
T  50305503 ccctaaatgccacc 50305516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 50305668 - 50305619
Alignment:
Q  336 actttcctatggtagaaaaatctttccccttcacaccctaaatgccacca 385  Q
    ||||||||||||||| ||| ||||||||||||  | ||||||||||||||    
T  50305668 actttcctatggtaggaaactctttccccttcctatcctaaatgccacca 50305619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 51491749 - 51491708
Alignment:
Q  344 atggtagaaaaatctttccccttcacaccctaaatgccacca 385  Q
    ||||| |||||||||||||||||| |||||||||| ||||||    
T  51491749 atggtggaaaaatctttccccttcccaccctaaataccacca 51491708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 42147564 - 42147596
Alignment:
Q  352 aaaatctttccccttcacaccctaaatgccacc 384  Q
    |||||||||||||||| ||||||||||||||||    
T  42147564 aaaatctttccccttcccaccctaaatgccacc 42147596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 47481183 - 47481259
Alignment:
Q  278 tagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaa 354  Q
    |||||||||| || |||||||| || ||| |||| |||||||  |||||  |||| ||||||| |||||||||||||    
T  47481183 tagtgttgagagaatatgataaaagtatggtctttatttgatctaatggataaaatttacttttctatggtagaaaa 47481259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 23383449 - 23383346
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttccta 344  Q
    |||||||||| || ||||||||||||| ||||||||| |||| |||||||||||||||  |||||||||||||||  |||||  |||| | ||||||| |    
T  23383449 gagagagggtggaagatagtgtaaaaattaatctagtattgatggagtatgataagagtgtgttcttcatttgatcgaatggataaaattaactttccca 23383350  T
Q  345 tggt 348  Q
    ||||    
T  23383349 tggt 23383346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 384
Target Start/End: Complemental strand, 5825456 - 5825334
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatct 358  Q
    |||||||||||||||   ||||||||||| ||||| ||||| |   ||||| |||||||||  |||||| | |||  ||||| ||||||| | ||| |||    
T  5825456 gatagtgtaaaaaat---ctagtgttgagagagtaggataataatgtgttcctcatttgatctaatggttagaaaaaactttgctatggtgggaaactct 5825360  T
Q  359 ttccccttcacaccctaaatgccacc 384  Q
    ||||| ||| ||||||||||||||||    
T  5825359 ttcccattcccaccctaaatgccacc 5825334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 39523180 - 39523230
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagtgttgagggagtatg 295  Q
    |||||||||| || |||||||||||||||||| |||||||||| |||||||    
T  39523180 gagagagggtggaagatagtgtaaaaaataatttagtgttgagagagtatg 39523230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 31634762 - 31634823
Alignment:
Q  279 agtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattacttt 340  Q
    |||||||||||||||||||||||| || ||||||||| |||  |||||| |||| |||||||    
T  31634762 agtgttgagggagtatgataagagtatattcttcattagatctaatggttaaaacttacttt 31634823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 20350444 - 20350380
Alignment:
Q  278 tagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcc 342  Q
    |||||||||| ||||||||||| || ||| ||||||||||||| |||||  |||| |||||||||    
T  20350444 tagtgttgagagagtatgataaaagtatgatcttcatttgatttaatgggtaaaatttactttcc 20350380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 54453489 - 54453577
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggt 348  Q
    ||||||||||||  |||||||||||||| ||||||||||||||   ||||||| |||| ||| |||||   ||| ||||||||| |||||    
T  54453489 gatagtgtaaaat-taatctagtgttgaaggagtatgataagaaagtgttctttatttaattaaatggattaaatttactttcccatggt 54453577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 36451335 - 36451391
Alignment:
Q  245 gagagagggttgatgatagtgtaaaa-aataatctagtgttgagggagtatgataag 300  Q
    |||||| ||| || |||||||||||| ||||||||||||||||| ||||| ||||||    
T  36451335 gagagatggtggaagatagtgtaaaacaataatctagtgttgagagagtaggataag 36451391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 384
Target Start/End: Complemental strand, 6353802 - 6353684
Alignment:
Q  266 taaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatctttcccct 365  Q
    |||||||||||| |||| |||||||||||||||| ||  |||| ||||||| ||  |||||| |||| ||||||||||||| | | ||||||||||||      
T  6353802 taaaaaataatccagtgctgagggagtatgataaaagtgtgtttttcatttcatctaatggttaaaatttactttcctatgatgggaaaatctttccctc 6353703  T
Q  366 tcacaccctaaatgccacc 384  Q
     | ||||||||||||||||    
T  6353702 acccaccctaaatgccacc 6353684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 33002071 - 33002015
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagtgttgagggagtatgataaga 301  Q
    |||||||||| || |||||||||||||||||| |||||||||| || ||||||||||    
T  33002071 gagagagggtggaagatagtgtaaaaaataatttagtgttgagagaatatgataaga 33002015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 16970976 - 16971039
Alignment:
Q  279 agtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcc 342  Q
    ||||||||||||||||||||||||  | ||||||||| |||  |||||| |||| |||||||||    
T  16970976 agtgttgagggagtatgataagagtgtattcttcattagatctaatggttaaaacttactttcc 16971039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 30002907 - 30002864
Alignment:
Q  341 cctatggtagaaaaatctttccccttcacaccctaaatgccacc 384  Q
    |||||||| | |||||||||||||||| ||||||||||||||||    
T  30002907 cctatggtgggaaaatctttccccttcccaccctaaatgccacc 30002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 385
Target Start/End: Complemental strand, 1282369 - 1282253
Alignment:
Q  269 aaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatctttccccttca 368  Q
    |||| ||||||||||| || |||||| ||||   ||||||| ||||||||| |||  || || | | ||||||| || || | ||| |||||||| |||     
T  1282369 aaaaaaatctagtgtttagagagtatcataatgccatgttcatcatttgatccaactgtcaagattaactttcccatagtgggaaactctttcccattcc 1282270  T
Q  369 caccctaaatgccacca 385  Q
    |||||||||||||||||    
T  1282269 caccctaaatgccacca 1282253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 27360 - 27304
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagtgttgagggagtatgataaga 301  Q
    |||||||||| || |||||||||||||||||| |||||||||| |||||||||||||    
T  27360 gagagagggtggaagatagtgtaaaaaataatttagtgttgagagagtatgataaga 27304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 387
Target Start/End: Original strand, 4125350 - 4125468
Alignment:
Q  269 aaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatctttccccttca 368  Q
    |||| ||||||||||| || |||||| |||| | ||||||| ||||||||| |||  || || | | |||||||||| || | ||| |||||||| |||     
T  4125350 aaaaaaatctagtgtttagagagtatcataataccatgttcatcatttgatccaactgtcaagattaactttcctatagtgggaaactctttcccattcc 4125449  T
Q  369 caccctaaatgccaccatg 387  Q
    |||||||||||||||||||    
T  4125450 caccctaaatgccaccatg 4125468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 384
Target Start/End: Complemental strand, 13536406 - 13536281
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatct 358  Q
    |||||||||||||||||| |||| |||| ||||||||||||||  ||| |||| |||  ||| ||| || |||| ||| ||| | ||| ||| ||| |||    
T  13536406 gatagtgtaaaaaataatatagtattgatggagtatgataagaatatgctctttattcaatttaatagttaaaatttatttttccatgataggaaactct 13536307  T
Q  359 ttccccttcacaccctaaatgccacc 384  Q
    |||||   | ||||||||||||||||    
T  13536306 ttccctcacccaccctaaatgccacc 13536281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 193968 - 193908
Alignment:
Q  266 taaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatgg 326  Q
    |||||||||||||||||| ||| |||||||||||||  |||||| |||||| ||| |||||    
T  193968 taaaaaataatctagtgtggagagagtatgataagaatatgttcctcatttaatttaatgg 193908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 12926012 - 12925964
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagtgttgagggagta 293  Q
    |||||||||| || ||||||||||||||||||||| ||||||| |||||    
T  12926012 gagagagggtggaagatagtgtaaaaaataatctaatgttgagagagta 12925964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 45064791 - 45064728
Alignment:
Q  279 agtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcc 342  Q
    |||||||||||||||||||||||| || ||||| ||| |||  |||||| |||| |||||||||    
T  45064791 agtgttgagggagtatgataagagtatattcttaattagatctaatggttaaaacttactttcc 45064728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 3788481 - 3788435
Alignment:
Q  338 tttcctatggtagaaaaatctttccccttcacaccctaaatgccacc 384  Q
    ||||||||||| | ||| |||||||||||| ||||||||||||||||    
T  3788481 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 3788435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 27418289 - 27418207
Alignment:
Q  259 gatagtgtaaaaaataatctagtgtt-gagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattacttt 340  Q
    ||||||||| |||||||| ||||||| ||| |||||| | |||||  || ||||||||||||  |||||| ||||||||||||    
T  27418289 gatagtgtataaaataatatagtgttcgagagagtataacaagagtgtgctcttcatttgatctaatggttaaaaattacttt 27418207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 6076112 - 6076059
Alignment:
Q  246 agagagggttgatgatagtgtaaaaaataatctagtgttgagggagtatgataa 299  Q
    |||||| || || |||||||||||||||||| |||||||||| || ||||||||    
T  6076112 agagagagtggaagatagtgtaaaaaataatttagtgttgagagactatgataa 6076059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 3789338 - 3789386
Alignment:
Q  336 actttcctatggtagaaaaatctttccccttcacaccctaaatgccacc 384  Q
    ||||||||||||||| ||| ||||||||||||  | |||||||||||||    
T  3789338 actttcctatggtaggaaactctttccccttcctatcctaaatgccacc 3789386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 15374713 - 15374745
Alignment:
Q  352 aaaatctttccccttcacaccctaaatgccacc 384  Q
    |||||||||||||||| ||||||||||||||||    
T  15374713 aaaatctttccccttcccaccctaaatgccacc 15374745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 17050592 - 17050544
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagtgttgagggagta 293  Q
    |||||||||| || ||||||||||||||||||||| | ||||| |||||    
T  17050592 gagagagggtggaagatagtgtaaaaaataatctaatattgagagagta 17050544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 31390746 - 31390786
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataa 299  Q
    ||||||||||||||||||||| ||||||| ||||| |||||    
T  31390746 gatagtgtaaaaaataatctaatgttgagagagtaggataa 31390786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 43316473 - 43316393
Alignment:
Q  268 aaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggt 348  Q
    |||| |||||| ||||||| ||||||||||||||  || ||||| |||||||  |||||  |||| ||||||||| |||||    
T  43316473 aaaattaatctggtgttgaaggagtatgataagaaaatattctttatttgatcaaatggataaaatttactttcccatggt 43316393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 47334339 - 47334283
Alignment:
Q  245 gagagagggttgatgatagtgtaaaa-aataatctagtgttgagggagtatgataag 300  Q
    |||||| ||| || |||||||||||| ||||||||||||||||| ||||| ||||||    
T  47334339 gagagatggtggaagatagtgtaaaacaataatctagtgttgagagagtaggataag 47334283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 38072199 - 38072256
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagt-gttgagggagtatgataaga 301  Q
    |||||||||| || ||||||||||||||||||||||| |||||| |||||||||||||    
T  38072199 gagagagggtggaagatagtgtaaaaaataatctagtggttgagagagtatgataaga 38072256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 9378777 - 9378729
Alignment:
Q  336 actttcctatggtagaaaaatctttccccttcacaccctaaatgccacc 384  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  9378777 actttcccatggtggaaaaatctttccccttcccaccctaaatgccacc 9378729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 4261345 - 4261288
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagt-gttgagggagtatgataaga 301  Q
    |||||||| | || ||||||||||||||||||||||| |||||| |||||||||||||    
T  4261345 gagagaggttggaagatagtgtaaaaaataatctagtggttgagagagtatgataaga 4261288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 386
Target Start/End: Original strand, 9379732 - 9379845
Alignment:
Q  274 aatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaatta-ctttcctatggtagaaaaatctttccccttcacacc 372  Q
    ||||||||| |||| || |||||||| |  ||| |||||||||||| ||| | | | |||| | |||||| || || ||||||||||||||| || ||||    
T  9379732 aatctagtggtgagagactatgataaaactatgctcttcatttgatccaaggattagaaatcaactttcccatagtggaaaaatctttccccatcccacc 9379831  T
Q  373 ctaaatgccaccat 386  Q
    ||||||||||||||    
T  9379832 ctaaatgccaccat 9379845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 7677718 - 7677774
Alignment:
Q  245 gagagagggttgatgatagtgtaaaaaataatctagtgttgagggagtatgataaga 301  Q
    |||||||||| || |||| ||||||||||||| |||||||||| || ||||||||||    
T  7677718 gagagagggtggaagatattgtaaaaaataatttagtgttgagagaatatgataaga 7677774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 30402795 - 30402871
Alignment:
Q  278 tagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaa 354  Q
    |||||||||| ||||||||||| || ||| ||||||||||||  |||||  |||| ||||||||| ||||| |||||    
T  30402795 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatggtggaaaa 30402871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 29315254 - 29315317
Alignment:
Q  279 agtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcc 342  Q
    ||||||||||||||||||||||||  | ||||||||| |||  |||||| |||| |||||||||    
T  29315254 agtgttgagggagtatgataagagtgtattcttcattagatctaatggttaaaacttactttcc 29315317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 386
Target Start/End: Complemental strand, 3820454 - 3820392
Alignment:
Q  324 tggtaaaaaattactttcctatggtagaaaaatctttccccttcacaccctaaatgccaccat 386  Q
    ||||||||||  |||||||||| |||| ||| |||||| ||| | ||||||||||||||||||    
T  3820454 tggtaaaaaaaaactttcctatagtaggaaactctttcacctacccaccctaaatgccaccat 3820392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 30915840 - 30915770
Alignment:
Q  278 tagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggt 348  Q
    |||||||||| ||||||||||| || ||| ||||||||||||  |||||  |||| ||||||||| |||||    
T  30915840 tagtgttgagagagtatgataaaagtatggtcttcatttgatctaatgggtaaaatttactttcccatggt 30915770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 41195289 - 41195329
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataa 299  Q
    |||||| |||||||||||||||||| ||| |||||||||||    
T  41195289 gatagtataaaaaataatctagtgtggagagagtatgataa 41195329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 5504424 - 5504343
Alignment:
Q  304 atgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatctttccccttcacaccctaaatgccacca 385  Q
    ||||| ||||||||||  |||||| |||||| ||||| |||| || | ||| |||||||||||| |||||||||||||||||    
T  5504424 atgttattcatttgatctaatggtcaaaaatcacttttctatagtgggaaactctttccccttcccaccctaaatgccacca 5504343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 355
Target Start/End: Original strand, 16427230 - 16427306
Alignment:
Q  279 agtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaa 355  Q
    |||||||||||||||||||||||| || ||||||||| |||  |||||| |||| ||||||||| ||| | ||||||    
T  16427230 agtgttgagggagtatgataagagtatattcttcattagatctaatggttaaaacttactttcccatgatggaaaaa 16427306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 354
Target Start/End: Original strand, 36391595 - 36391690
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaa 354  Q
    |||||||||  ||||||||||||||||||||| ||  |||||||   |||| |||||| ||| |||||| |||| ||||||||| ||||| |||||    
T  36391595 gatagtgtaggaaataatctagtgttgagggaataaaataagagtgcgttcctcatttaatttaatggttaaaatttactttcccatggtggaaaa 36391690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 40992878 - 40992931
Alignment:
Q  279 agtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaa 332  Q
    |||||||||||||||||||||||| || ||||||||| |||| |||||| ||||    
T  40992878 agtgttgagggagtatgataagagtatattcttcattagatttaatggttaaaa 40992931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 5505206 - 5505268
Alignment:
Q  322 aatggtaaaaaattactttcctatggtagaaaaatctttccccttcacaccctaaatgccacc 384  Q
    |||||| |||||  ||||||| ||||| ||||| ||||||| |||| ||||||||||||||||    
T  5505206 aatggtcaaaaaacactttcccatggtggaaaactctttcctcttcccaccctaaatgccacc 5505268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 6182154 - 6182092
Alignment:
Q  322 aatggtaaaaaattactttcctatggtagaaaaatctttccccttcacaccctaaatgccacc 384  Q
    |||||| ||||  |||||||||||||| |||||||||||||| | | ||||||||||| ||||    
T  6182154 aatggtcaaaatctactttcctatggtggaaaaatctttcccttacccaccctaaatgtcacc 6182092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 9371064 - 9370958
Alignment:
Q  278 tagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggtagaaaaatctttccccttcacaccctaaa 377  Q
    |||||||||| | ||||||||| || ||||||||||||| ||  |||||   ||| ||||||||| || ||||  || |||||||| | | |||||||||    
T  9371064 tagtgttgagagtgtatgataaaagtatgttcttcatttaatctaatggctgaaatttactttcccatagtagggaattctttcccttacccaccctaaa 9370965  T
Q  378 tgccacc 384  Q
    |||||||    
T  9370964 tgccacc 9370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 26021913 - 26021959
Alignment:
Q  338 tttcctatggtagaaaaatctttccccttcacaccctaaatgccacc 384  Q
    ||||||||||| | ||| |||||||||||| ||||||||||||||||    
T  26021913 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 26021056 - 26021007
Alignment:
Q  336 actttcctatggtagaaaaatctttccccttcacaccctaaatgccacca 385  Q
    ||||||||||||||| ||| ||||||||||||  | ||||||||||||||    
T  26021056 actttcctatggtaggaaactctttccccttcctatcctaaatgccacca 26021007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 4478976 - 4478936
Alignment:
Q  259 gatagtgtaaaaaataatctagtgttgagggagtatgataa 299  Q
    |||||| |||||||||||||||||| ||| |||||||||||    
T  4478976 gatagtataaaaaataatctagtgtggagagagtatgataa 4478936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 22252 - 22178
Alignment:
Q  274 aatctagtgttgagggagtatgataagagcatgttcttcatttgattcaatggtaaaaaattactttcctatggt 348  Q
    |||||| ||||||||||||||||||||||  |||| ||||||| || ||||| | |||| ||||||||| |||||    
T  22252 aatctaatgttgagggagtatgataagagtgtgtttttcatttaatccaatgattaaaacttactttcccatggt 22178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 67279 - 67247
Alignment:
Q  352 aaaatctttccccttcacaccctaaatgccacc 384  Q
    |||||||||||||||| ||||||||||||||||    
T  67279 aaaatctttccccttcccaccctaaatgccacc 67247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University