View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_7 (Length: 502)
Name: NF3593_low_7
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 13857810 - 13857307
Alignment:
| Q |
1 |
acaaagatttgctttacatttaaatgggaccaccacaaatgcacaatgaaatacgaccccgcaaattagtcgatccttggaccggataccgagtttnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13857810 |
acaaagatttgctttacatttaaatgggaccaccacaaatgcacaatgaaatacgacccctcaaattagtcgatccttggaccggataccgagtttaaaa |
13857711 |
T |
|
| Q |
101 |
nnnnnn-cacgctcatgtggaggcaaatctattcatatgaacttgtatttgaccaagcaagaaattgccctctcaacaaatagtatctacttgcaacatg |
199 |
Q |
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| T |
13857710 |
aaaaaaacacgctcatgtggaggcaaatctattcatatgaacttgtatttgaccaagcaagaaattgccctctcaacaaatagtatctacttgcaacatg |
13857611 |
T |
|
| Q |
200 |
ttaaaatcattagaaacatgttcagctcaaaactaacacaagatataagcctataccaaaaagagtactctatacccatcaaaaccagatgaaatactat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13857610 |
ttaaaatcattagaaacatgttcagctcaaaactaacacaagatataagcctataccaaaaagagtactctatacccatcaaaaccagatgaaatactat |
13857511 |
T |
|
| Q |
300 |
caagaggaataaatcaagaagaccaatcatttacacatt-nnnnnnnntgtaatcccaaagccaaagcctataattcaaacttaaccaaaaacatggaat |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13857510 |
caagaggaataaatcaagaagaccaatcatttacacattaaaaaaaaatgtaatcccaaagccaaagcctataattcaaacttaaccaaaaacatggaat |
13857411 |
T |
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| Q |
399 |
ttttgcctacaagcgtgaactaagtgatcnnnnnnnnnttcaaagtgtgtatcaaactctctacctcgttaaatgttagcattatgcttgaactctcgac |
498 |
Q |
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| T |
13857410 |
ttttgcctacaagcgtgaactaagtgagcaaaaaaaaattcaaagtgtgtatcaaactctctacctcgttaaatgttagcattatgcttgaactctcgac |
13857311 |
T |
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| Q |
499 |
cttc |
502 |
Q |
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|||| |
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| T |
13857310 |
cttc |
13857307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 5528700 - 5528637
Alignment:
| Q |
170 |
tctcaacaaatagtatctacttgcaa-catgttaaaatcattagaaacatgttcagctcaaaac |
232 |
Q |
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| T |
5528700 |
tctcaacaaatcatatctacttacaatcatgttaaaatcattagaaacaagttcagctcaaaac |
5528637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 5529153 - 5529091
Alignment:
| Q |
170 |
tctcaacaaatagtatctacttgcaa-catgttaaaatcattagaaacatgttcagctcaaaa |
231 |
Q |
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|||||||||||| ||||||||||||| ||| |||||| |||||||||||||||| ||||||| |
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| T |
5529153 |
tctcaacaaataatatctacttgcaagcatcttaaaacaattagaaacatgttcaactcaaaa |
5529091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 20306076 - 20306108
Alignment:
| Q |
64 |
aattagtcgatccttggaccggataccgagttt |
96 |
Q |
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| T |
20306076 |
aattagtcgatccttggatcggataccgagttt |
20306108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 21092709 - 21092741
Alignment:
| Q |
64 |
aattagtcgatccttggaccggataccgagttt |
96 |
Q |
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| T |
21092709 |
aattagtcgatccttggatcggataccgagttt |
21092741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 31274081 - 31274113
Alignment:
| Q |
64 |
aattagtcgatccttggaccggataccgagttt |
96 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
31274081 |
aattagtcgattcttggaccggataccgagttt |
31274113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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