View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3593_low_9 (Length: 473)
Name: NF3593_low_9
Description: NF3593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3593_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 142 - 458
Target Start/End: Original strand, 42534815 - 42535134
Alignment:
| Q |
142 |
gataataagaagcaccagttgagtagtactatttcatttgtttgtggtaatcaattcttcatcatatacaccaaattcaaatattagcaatttgtttgtt |
241 |
Q |
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| T |
42534815 |
gataataagaagcaccagttgagtagtactatttcatttgtttgtggtaatcaattcttcatcatatacaccaaattcaaatattagcaatttgtttgtt |
42534914 |
T |
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| Q |
242 |
tgtttattcttcttgacttcttgtctatttgtttttcctcccaacattgtttcttatttttccc---aatattgttgtcgtatttaaatatagagtttaa |
338 |
Q |
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| T |
42534915 |
tgtttattcttcttgacttcttgtctatttgtttttcctcccaacattgtttcttatttttcccaataatattgttgtcgtatttaaatatagagtttaa |
42535014 |
T |
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| Q |
339 |
taaacatattgtgaatacattgtaatgtattaacattcatctaatgagatatgactatgttttcatggatcacactactaatttttaaccaccttttaaa |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535015 |
taaacatattgtgaatacattgtaatgtattaacattcatctaatgagatatgactatgttttcatggatcacactactaatttttaaccaccttttaaa |
42535114 |
T |
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| Q |
439 |
ggacaggttaatggttatgt |
458 |
Q |
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|||||||||||||||||||| |
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| T |
42535115 |
ggacaggttaatggttatgt |
42535134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 42534298 - 42534349
Alignment:
| Q |
28 |
tacttgacaaaaaatattgacctggtcagtgaagctaagtcttatgaacctc |
79 |
Q |
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| T |
42534298 |
tacttgacaaaaaatatggacctggtcagtgaagctaagtcttaggaacctc |
42534349 |
T |
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