View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_high_12 (Length: 378)
Name: NF3594_high_12
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 52998122 - 52998482
Alignment:
| Q |
1 |
atctttaacttttaggagaaaactattgtcatattgaagtatatacaatgtacaggaagcttttatatacagctatatttaatcttttg-ctaactaaca |
99 |
Q |
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| T |
52998122 |
atctttaacttttaggagaaaactattgtcatattgaagtatatacaatgtacaggaagcttttatgtacagctatatttaatctttttactagctaaca |
52998221 |
T |
|
| Q |
100 |
taagagaatacagttggaatgaactaatctgcaacgaactaatcagaagttaaactaacttataacaaatttataatactaaaatttacacacacaacaa |
199 |
Q |
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| T |
52998222 |
taagagaatacagttggaatgaactaacctgcaacgaactaatcagaagttaaactaacttataacaaatttataatactaaaatttacacacacaacaa |
52998321 |
T |
|
| Q |
200 |
aattaattaatattgggggcggaatatatgcacatgcagtactactcctcatatatatcccacatttagaatgcatattataagagataagggattggct |
299 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52998322 |
aattaattaatattgggtgcggaatatatgcacatgcagtactactcctc------atcccacatttagaatgcatattataagagataagggattggct |
52998415 |
T |
|
| Q |
300 |
gcatacaatgtggtcctcgttctatctacaatatat------tatatagagatatagcagaatgata |
360 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
52998416 |
gcatacaatgtggtcctcgttctatctgcaatatattatatatatatagagatatagcagaatgata |
52998482 |
T |
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