View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3594_high_13 (Length: 378)

Name: NF3594_high_13
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3594_high_13
NF3594_high_13
[»] chr3 (5 HSPs)
chr3 (19-192)||(36147371-36147544)
chr3 (195-364)||(36147511-36147680)
chr3 (200-346)||(36081025-36081168)
chr3 (104-192)||(36080966-36081053)
chr3 (219-268)||(36157808-36157857)
[»] chr6 (2 HSPs)
chr6 (20-69)||(26528508-26528557)
chr6 (129-192)||(26528372-26528435)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 36147371 - 36147544
Alignment:
Q  19 gtatatctatcatatatattgtagactcaactggaacaatgattgaaactcaaaacaaacaattgagatgtacgaaagactatagaagtgtaactaagtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36147371 gtatatctatcatatatattgtagactcaactggaacaatgattgaaactcaaaacaaacaattgagatgtacgaaagactataaaagtgtaactaagtt 36147470  T
Q  119 ctnnnnnnnngtgtaattaagtctttatgaaattctaacaattgtactaatttatacgaggtcttaagataata 192  Q
    ||        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36147471 ctaaaaaaaagtgtaattaagtctttatgaaattctaacaattgtattaatttatacgaggtcttaagataata 36147544  T

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Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 195 - 364
Target Start/End: Original strand, 36147511 - 36147680
Alignment:
Q  195 attgtactaatttatacaaggtcttaagataatacgtagaagatatttaaaacaataatgttttacttatagatagnnnnnnnataagcaattttattta 294  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  36147511 attgtattaatttatacgaggtcttaagataatacgtagaagatatttaaaacaataatgttttacttatagatagtttttttataagcaattttattta 36147610  T
Q  295 tttattaagggagtattataggtactccaaacccattttaaggcactccaagcccactcacttatagatg 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36147611 tttattaagggagtattataggtactccaaacccattttaaggcactccatgcccactcacttatagatg 36147680  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 346
Target Start/End: Original strand, 36081025 - 36081168
Alignment:
Q  200 actaatttatacaaggtcttaagataatacgtagaagatatttaaaacaataatgttttacttatagatagnnnnnnnataagcaattttatttatttat 299  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |       |||||||| |  |||  |||||    
T  36081025 actaatttatacgaggtcttaagataatacgtagaa-atatttaaaacaataatgttttacttatatattgtttttttataagcaaataaatt--tttat 36081121  T
Q  300 taagggagtattataggtactccaaacccattttaaggcactccaag 346  Q
    ||||||||||||| ||||||| ||| |||||||||||||||| ||||    
T  36081122 taagggagtattagaggtactgcaagcccattttaaggcacttcaag 36081168  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 36080966 - 36081053
Alignment:
Q  104 aagtgtaactaagttctnnnnnnnngtgtaattaagtctttatgaaattctaacaattgtac--taatttatacgaggtcttaagataata 192  Q
    |||||||||||||||||        ||| ||||||||||||| |||||   |||||||||||  |||||||||||||||||||||||||||    
T  36080966 aagtgtaactaagttctaaaaagaagtgcaattaagtctttacgaaat---aacaattgtacactaatttatacgaggtcttaagataata 36081053  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 36157808 - 36157857
Alignment:
Q  219 taagataatacgtagaagatatttaaaacaataatgttttacttatagat 268  Q
    ||||||||| | ||| |||||||||||||||||| ||||| |||||||||    
T  36157808 taagataatgcatagtagatatttaaaacaataacgttttgcttatagat 36157857  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 26528557 - 26528508
Alignment:
Q  20 tatatctatcatatatattgtagactcaactggaacaatgattgaaactc 69  Q
    ||||||||| |||||||||||||||||||| ||| ||| |||||||||||    
T  26528557 tatatctattatatatattgtagactcaacaggagcaacgattgaaactc 26528508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 26528435 - 26528372
Alignment:
Q  129 gtgtaattaagtctttatgaaattctaacaattgtactaat---ttatacgaggtcttaagataata 192  Q
    |||||||||| || |||||||||   |||||||||||||||   |||||||||||||||||||||||    
T  26528435 gtgtaattaaatccttatgaaat---aacaattgtactaataatttatacgaggtcttaagataata 26528372  T

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