View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3594_high_16 (Length: 348)
Name: NF3594_high_16
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 42205869 - 42205532
Alignment:
| Q |
1 |
gacttaattgaaaata-tcatatgtgtcggtgtcggacacgatatg-------caccgaacacgcctaatccaaggagtaaaggtgcttcatatagaata |
92 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205869 |
gacttaattgaaaataatcatatgtgtcggtgccggacacgatatgtatctgacaccgaacacgcctaatccaaggagtaaaggtgcttcatatagaata |
42205770 |
T |
|
| Q |
93 |
ataattnnnnnnncagggaactaactgtgaagtataggataggttggattaagatatcatatcacaactagaaaaaataatcaatcaaaagtgcaaataa |
192 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205769 |
ataattaaaaaagcagggaactaactgtgaagtataggataggttggattaagatatcatatcacaactagaaaaaataatcaatcaaaagtgcaaataa |
42205670 |
T |
|
| Q |
193 |
atctgtgaaatgttcatcaaacaagcaaattacacatgaattcagtgtgaaatggatatcatcgtgttacaaattcacctaattaaggttttattatcta |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205669 |
atctgtgaaatgttcatcaaacaagcaaattacacatgaattcagtgtgaaatggatatcatcgtgttacaaattcacctaattaaggttttattatcta |
42205570 |
T |
|
| Q |
293 |
tttatttacacatatttctgattgatcacatatcatat |
330 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42205569 |
tttattcacacatatttctgattgatcacatatcatat |
42205532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 42212943 - 42212802
Alignment:
| Q |
109 |
ggaactaactgtgaagtataggataggttggattaagatatcatatcacaactagaaaaaataatcaatc-aaaagtgcaaataaatctgtgaaatgttc |
207 |
Q |
| |
|
||||| |||||| |||||||||||| |||||||||||||| || | | | |||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42212943 |
ggaacaaactgtaaagtataggataagttggattaagatagcacagct--aggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttc |
42212846 |
T |
|
| Q |
208 |
atcaaacaagcaaattacacatgaatt-cagtgtgaaatggata |
250 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42212845 |
atcaaacaagcaaattacacatgaattgcagtgtgaaatggata |
42212802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University