View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3594_high_19 (Length: 318)

Name: NF3594_high_19
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3594_high_19
NF3594_high_19
[»] chr1 (13 HSPs)
chr1 (18-238)||(42950470-42950683)
chr1 (266-307)||(42950677-42950718)
chr1 (209-285)||(44751955-44752031)
chr1 (209-285)||(9454473-9454549)
chr1 (213-285)||(32423542-32423614)
chr1 (200-258)||(36472651-36472709)
chr1 (200-285)||(10799199-10799284)
chr1 (200-257)||(18635718-18635775)
chr1 (216-285)||(31283740-31283808)
chr1 (210-285)||(45443457-45443527)
chr1 (218-271)||(5267974-5268027)
chr1 (200-257)||(43965072-43965129)
chr1 (237-285)||(15682181-15682229)
[»] chr8 (7 HSPs)
chr8 (208-285)||(26055458-26055535)
chr8 (200-285)||(20472387-20472472)
chr8 (200-285)||(14239244-14239330)
chr8 (200-285)||(5431628-5431712)
chr8 (210-285)||(12020069-12020144)
chr8 (214-280)||(26760218-26760284)
chr8 (200-285)||(36772774-36772861)
[»] chr3 (9 HSPs)
chr3 (200-285)||(42529435-42529520)
chr3 (209-285)||(37101053-37101129)
chr3 (205-285)||(51569815-51569895)
chr3 (202-246)||(11660536-11660580)
chr3 (209-258)||(8790022-8790071)
chr3 (203-292)||(21498410-21498498)
chr3 (235-285)||(34073338-34073388)
chr3 (213-258)||(50574797-50574842)
chr3 (207-259)||(25654733-25654785)
[»] chr4 (8 HSPs)
chr4 (200-285)||(30979823-30979908)
chr4 (209-285)||(38020382-38020458)
chr4 (205-267)||(33801944-33802006)
chr4 (200-285)||(2097084-2097169)
chr4 (200-258)||(8456805-8456863)
chr4 (209-258)||(20228277-20228326)
chr4 (200-285)||(25391017-25391102)
chr4 (228-261)||(5776833-5776866)
[»] chr2 (7 HSPs)
chr2 (200-285)||(26009790-26009875)
chr2 (206-285)||(31827313-31827392)
chr2 (200-285)||(10429857-10429942)
chr2 (200-265)||(32103578-32103643)
chr2 (200-256)||(16452218-16452274)
chr2 (211-257)||(8734476-8734522)
chr2 (200-285)||(33859236-33859321)
[»] chr5 (6 HSPs)
chr5 (200-285)||(7367587-7367673)
chr5 (200-258)||(10635348-10635406)
chr5 (209-285)||(9860749-9860826)
chr5 (200-258)||(6296853-6296911)
chr5 (200-258)||(29814964-29815022)
chr5 (205-246)||(33391890-33391931)
[»] chr7 (4 HSPs)
chr7 (200-285)||(33084929-33085014)
chr7 (232-285)||(35451153-35451206)
chr7 (205-242)||(48310140-48310177)
chr7 (207-285)||(37829928-37830007)
[»] chr6 (1 HSPs)
chr6 (212-258)||(31957890-31957936)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 42950470 - 42950683
Alignment:
Q  18 aaaattacgtgatttaggtataaccattaacattattagattagattaacgagcatcctgtctaccggcacttttgattgaaggtgtgtcctgtgtccca 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42950470 aaaattacgtgatttagttataaccattaacattattagatta-----acgagcatcctgtctaccggcacttttgattgaaggtgtgtcctgtgtccca 42950564  T
Q  118 cacgaaaaccaattcgtgattacattcaatcatgtcatttctcataaattatcacgacttgtcagtgtcggtgcccggtgctttggatagttcaactggt 217  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42950565 c--gaaaaccaattcgtgattacattcaatcatgtcatttctcataaattatcacgacttgtcagtgtcggtgcctggtgctttggatagttcaactggt 42950662  T
Q  218 ttgagctaagagataaagagt 238  Q
    |||||||||||||||||||||    
T  42950663 ttgagctaagagataaagagt 42950683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 42950677 - 42950718
Alignment:
Q  266 aaagagtaaatattaatctataaactactaccgctgttctgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42950677 aaagagtaaatattaatctataaactactaccgctgttctgt 42950718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 44752031 - 44751955
Alignment:
Q  209 tcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    ||||||||||||||||||| ||||| | |||||||||  |||||||||||  |||| || |||||||||||||||||    
T  44752031 tcaactggtttgagctaagggataaggggttggaggttctgggttcaaacccggacaaatgagtaaatattaatcta 44751955  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 9454473 - 9454549
Alignment:
Q  209 tcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||||||||||||||| |||| |||||| ||||| ||| ||||||||  || | |||||||||||||||||||    
T  9454473 tcaagtggtttgagctaagatataaggagttgaaggtcctggattcaaactcagagggaagagtaaatattaatcta 9454549  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 32423614 - 32423542
Alignment:
Q  213 ctggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    ||||||||| ||||| |||||  |||||||| ||||||||||||||  |||| || |||||||||||||||||    
T  32423614 ctggtttgaactaagggataagaagttggagttcttgggttcaaacccggacaaaggagtaaatattaatcta 32423542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 36472709 - 36472651
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaac 258  Q
    |||| ||| ||||||||| ||||||||| ||||| |||||||||||| |||||||||||    
T  36472709 ttgggtagctcaactggtctgagctaagggataaggagttggaggtcctgggttcaaac 36472651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 10799199 - 10799284
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||| |||||| |||||||||||| |||||  ||||| || || |||||||||||  ||| ||| |||||||||||||||||    
T  10799199 ttgggtagctcaactagtttgagctaagggataagtagttgaagttcctgggttcaaaccaggatgaaggagtaaatattaatcta 10799284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 18635775 - 18635718
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaa 257  Q
    |||| ||||||||||||| ||||||||| ||||| ||||| |||||| ||||||||||    
T  18635775 ttgggtagttcaactggtctgagctaagggataaggagtttgaggtcctgggttcaaa 18635718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 31283740 - 31283808
Alignment:
Q  216 gtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||||||||||||||  |  ||||||||||||||||||||||| | |||||  |||||||||||||||||    
T  31283740 gtttgagctaagagaatataagttggaggtcttgggttcaaacct-gacgattgagtaaatattaatcta 31283808  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 45443527 - 45443457
Alignment:
Q  210 caactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||||||||||||| ||| || ||||||||||||||    |||||||||  ||||||| |||||||||||||||||    
T  45443527 caactggtttgagc-aagggaaaaagagttggaggt----ggttcaaacccggacgaaggagtaaatattaatcta 45443457  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 5268027 - 5267974
Alignment:
Q  218 ttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagag 271  Q
    |||||||||  ||||| |||||||||||||||||||||||| ||| | ||||||    
T  5268027 ttgagctaaaggataaggagttggaggtcttgggttcaaacctgggcaaaagag 5267974  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 43965072 - 43965129
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaa 257  Q
    |||| ||| |||| ||||||||||||||||||||  ||||||| ||||| ||||||||    
T  43965072 ttgggtagctcaattggtttgagctaagagataagaagttggaagtcttaggttcaaa 43965129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 15682229 - 15682181
Alignment:
Q  237 gttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||||||||| |||||||||||  ||| ||| |||||||||||||||||    
T  15682229 gttggaggtcctgggttcaaacccggatgaaggagtaaatattaatcta 15682181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 26055458 - 26055535
Alignment:
Q  208 ttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    ||||||||||||| | |||| ||||| |||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  26055458 ttcaactggtttgtgataagggataaggagttggaggtcatgggttcaaacttgaatgaaagagtaaatattaatcta 26055535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 20472387 - 20472472
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||||||||||  ||||||||||| |||||||||||||||    ||||||||||||  |||| |||||||||||||||||||    
T  20472387 ttgggtagttcaactactttgagctaagggataaagagttggagactctgggttcaaactcagacggaagagtaaatattaatcta 20472472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 14239330 - 14239244
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagt-aaatattaatcta 285  Q
    |||| ||| ||||||||| ||||||| | ||||| |||||||||||| |||||| |||| |||||||| |||| |||||||||||||    
T  14239330 ttgggtagctcaactggtctgagctaggggataaggagttggaggtcctgggtttaaacctggacgaatgagtaaaatattaatcta 14239244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 5431628 - 5431712
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||| ||| ||| ||||||||||| ||||| |||||||||||| || ||||||||| ||| |||||||||||||| ||||||    
T  5431628 ttgggtagctcagctgatttgagctaagggataaggagttggaggtc-tgagttcaaactcggatgaaagagtaaatataaatcta 5431712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 12020069 - 12020144
Alignment:
Q  210 caactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    ||||||||||||| |||| ||||| |||||||||||| |||||||||||    | ||| |||||||||||||||||    
T  12020069 caactggtttgagttaagggataaggagttggaggtcctgggttcaaacccaaatgaatgagtaaatattaatcta 12020144  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 26760284 - 26760218
Alignment:
Q  214 tggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatatta 280  Q
    |||||||||||||| ||||| ||||| |||||| |  | |||||| | |||||||||||||||||||    
T  26760284 tggtttgagctaagcgataaggagtttgaggtcctcagctcaaacctagacgaaagagtaaatatta 26760218  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 36772861 - 36772774
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagtt--ggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||| |||||| |||||||||||||||||| |||||   ||||| || ||||||| |   |||||| |||||||||||||||||    
T  36772861 ttgggtagctcaactagtttgagctaagagataaggagttagagaggtgttcggttcaagcccagacgaaggagtaaatattaatcta 36772774  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 42529435 - 42529520
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||| ||| ||||||||||||||| ||||| |||||||||||| || ||||||||||  |||||||||||||||||||||||    
T  42529435 ttgggtagctcagctggtttgagctaagggataaggagttggaggtcatgagttcaaacttaaacgaaagagtaaatattaatcta 42529520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 37101053 - 37101129
Alignment:
Q  209 tcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||  ||||| || |||| ||||||||||||    
T  37101053 tcaactggtttgagccaagagatgaagagttggaggtcttgggttcaaatctggacaaaggagtgaatattaatcta 37101129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 51569815 - 51569895
Alignment:
Q  205 tagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||||||| |||||||||||||| || || |||||||||||  |||||||||||| ||||||| ||| | |||||||||||    
T  51569815 tagttcaattggtttgagctaagggaaaaggagttggaggttctgggttcaaactcggacgaaggagaagatattaatcta 51569895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 11660580 - 11660536
Alignment:
Q  202 ggatagttcaactggtttgagctaagagataaagagttggaggtc 246  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||    
T  11660580 ggatagttcaactgatttgagctaagagttaaagagttggaggtc 11660536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 8790071 - 8790022
Alignment:
Q  209 tcaactggtttgagctaagagataaagagttggaggtcttgggttcaaac 258  Q
    ||||||||||||||||||| || | ||||||||||||| |||||||||||    
T  8790071 tcaactggtttgagctaagggacacagagttggaggtcctgggttcaaac 8790022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 292
Target Start/End: Complemental strand, 21498498 - 21498410
Alignment:
Q  203 gatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatctataaacta 292  Q
    ||||| |||||| |||||||||||| ||||| |||||||||||| || |||||||    |||||| |||||||||||| |||| ||||||    
T  21498498 gatagctcaactagtttgagctaagggataacgagttggaggtc-tgagttcaaatccagacgaatgagtaaatattagtctaaaaacta 21498410  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 34073388 - 34073338
Alignment:
Q  235 gagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||||||||||| ||||||||||| | |||| | |||||||||||||||||    
T  34073388 gagttggaggtcgtgggttcaaacctagacggaggagtaaatattaatcta 34073338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 50574842 - 50574797
Alignment:
Q  213 ctggtttgagctaagagataaagagttggaggtcttgggttcaaac 258  Q
    ||||||||||||||| ||||| |||||||||||| |||||| ||||    
T  50574842 ctggtttgagctaagggataaggagttggaggtcctgggttgaaac 50574797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 25654733 - 25654785
Alignment:
Q  207 gttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaact 259  Q
    ||||||||| | ||||||||| ||||| ||||| ||| |||||||||||||||    
T  25654733 gttcaactgatctgagctaagggataaggagttagagatcttgggttcaaact 25654785  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 30979823 - 30979908
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||  ||||||| ||| ||| | |||||||    
T  30979823 ttgggtagctcaactggtttgagctaagggataaggagttggaggtcttgggctcaaacccggacgaaggagaaaaaactaatcta 30979908  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 38020382 - 38020458
Alignment:
Q  209 tcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    ||||||||||||||||||| | ||| ||||||||||||   |||||||||  ||||||| |||||||||||||||||    
T  38020382 tcaactggtttgagctaagggttaaggagttggaggtccaaggttcaaacccggacgaaggagtaaatattaatcta 38020458  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 33802006 - 33801944
Alignment:
Q  205 tagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaa 267  Q
    ||||||||||| ||||||||||| ||||| |||||  ||||||||||||||||| ||||||||    
T  33802006 tagttcaactgatttgagctaagggataatgagtttaaggtcttgggttcaaacctggacgaa 33801944  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 2097084 - 2097169
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||| |||||| |||||||||||| | ||| |||||||||||| |||||||||||  |||| |  |||||||||||||||||    
T  2097084 ttgggtagctcaactagtttgagctaagggttaaggagttggaggtcctgggttcaaacccggacaagggagtaaatattaatcta 2097169  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 8456805 - 8456863
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaac 258  Q
    |||| ||| ||||||||||||||||||| ||||| |||||||| ||| |||||||||||    
T  8456805 ttgggtagctcaactggtttgagctaagggataaggagttggatgtcctgggttcaaac 8456863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 20228277 - 20228326
Alignment:
Q  209 tcaactggtttgagctaagagataaagagttggaggtcttgggttcaaac 258  Q
    |||||| |||||||||||| | ||| ||||||||||||||||||||||||    
T  20228277 tcaactagtttgagctaagggttaaggagttggaggtcttgggttcaaac 20228326  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 25391017 - 25391102
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||| ||| ||||||||||||||| || ||||||||||||||  |||||||||||  ||  ||| ||||||| |||||||||    
T  25391017 ttgggtagctcatctggtttgagctaagggaaaaagagttggaggtagtgggttcaaacccggcggaaggagtaaaaattaatcta 25391102  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Complemental strand, 5776866 - 5776833
Alignment:
Q  228 agataaagagttggaggtcttgggttcaaacttg 261  Q
    ||||||||||||||| ||||||||||||||||||    
T  5776866 agataaagagttggaagtcttgggttcaaacttg 5776833  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 26009790 - 26009875
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||  ||||||| ||| ||| | |||||||    
T  26009790 ttgggtagctcaactggtttgagccaagggataaagagttggaggtcctgggttcaaacccggacgaaggagaaaaaactaatcta 26009875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 31827392 - 31827313
Alignment:
Q  206 agttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||||||||| ||| || ||||||||||||||||||||||| || ||||||||  | || || |||||||||||||||||    
T  31827392 agttcaactgatttaagataagagataaagagttggaggtcatgtgttcaaacacgaacaaatgagtaaatattaatcta 31827313  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 10429942 - 10429857
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||| ||||||||||||||||||| ||||| |||| ||||||||| |||||||||   ||  || |||||||||||||||||    
T  10429942 ttgggtagctcaactggtttgagctaagggataaggagtaggaggtctttggttcaaacccagaaaaaggagtaaatattaatcta 10429857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 32103578 - 32103643
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacg 265  Q
    |||| ||| |||||| |||||||||||| ||| | |||||||||||| ||||||||||| ||||||    
T  32103578 ttgggtagctcaactagtttgagctaagggatgaggagttggaggtcatgggttcaaacctggacg 32103643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 16452274 - 16452218
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaa 256  Q
    |||| ||| ||||||||||||||||||| | | || |||||||||||||||||||||    
T  16452274 ttgggtagctcaactggtttgagctaagggttcaaaagttggaggtcttgggttcaa 16452218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 8734476 - 8734522
Alignment:
Q  211 aactggtttgagctaagagataaagagttggaggtcttgggttcaaa 257  Q
    |||||||||||||| || ||||| ||||||||||| |||||||||||    
T  8734476 aactggtttgagctgagggataaggagttggaggtattgggttcaaa 8734522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 33859321 - 33859236
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||||||| | ||||| |||||| ||||| |||| || || |||||| || ||| ||||  ||||||| |||||||||||||||||    
T  33859321 ttggatagctgaactgatttgagataagatataaggatttagaggtcatgagtttaaacccggacgaatgagtaaatattaatcta 33859236  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 7367587 - 7367673
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaag-agttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||||| | |||||| ||||| |||||| | ||||| |||||||||||||||||||||||   |||||| |||||||||||||||||    
T  7367587 ttggattgctcaacttgtttgcgctaagggttaaaggagttggaggtcttgggttcaaacaccgacgaaggagtaaatattaatcta 7367673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 10635406 - 10635348
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaac 258  Q
    |||| ||| ||||||||||||||||||| ||||| |||||||||||| ||| |||||||    
T  10635406 ttgggtagctcaactggtttgagctaagggataaggagttggaggtcctggcttcaaac 10635348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 9860826 - 9860749
Alignment:
Q  209 tcaactggtttgagctaagagataaag-agttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    ||||||||||||||||||| | ||||| ||||||||||| || |||||||||  ||| || ||||||||| |||||||    
T  9860826 tcaactggtttgagctaagggttaaaggagttggaggtcctgagttcaaactcagacaaaggagtaaatactaatcta 9860749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 6296853 - 6296911
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaac 258  Q
    |||| ||| |||| |||||||||||||| ||||| |||||||||||  |||||||||||    
T  6296853 ttgggtagctcaattggtttgagctaagggataaggagttggaggttctgggttcaaac 6296911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 29815022 - 29814964
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaac 258  Q
    |||| ||| |||| |||||||||||||| ||||| |||||||||||| | |||||||||    
T  29815022 ttgggtagctcaattggtttgagctaagggataaggagttggaggtcctaggttcaaac 29814964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 33391931 - 33391890
Alignment:
Q  205 tagttcaactggtttgagctaagagataaagagttggaggtc 246  Q
    |||||||||||||||||||||| ||  |||||||||||||||    
T  33391931 tagttcaactggtttgagctaatagtaaaagagttggaggtc 33391890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 33085014 - 33084929
Alignment:
Q  200 ttggatagttcaactggtttgagctaagagataaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||| ||| ||||||||||||||||||| ||||  |||||||||||| |||||| |||| |||||||| ||| ||| | |||||||    
T  33085014 ttgggtagctcaactggtttgagctaagggatatggagttggaggtcctgggttaaaacctggacgaaggagaaaaaactaatcta 33084929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 35451206 - 35451153
Alignment:
Q  232 aaagagttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    |||||||||||||| |||||||||||||   ||||| |||||||||||||||||    
T  35451206 aaagagttggaggttttgggttcaaactcaaacgaatgagtaaatattaatcta 35451153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 48310140 - 48310177
Alignment:
Q  205 tagttcaactggtttgagctaagagataaagagttgga 242  Q
    |||||||| |||||||||||||||||||||||||||||    
T  48310140 tagttcaattggtttgagctaagagataaagagttgga 48310177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 37829928 - 37830007
Alignment:
Q  207 gttcaactggtttgagctaagagataaag-agttggaggtcttgggttcaaacttggacgaaagagtaaatattaatcta 285  Q
    ||||||||||||||| ||||| | ||||| ||||||| ||| ||| |||||||  ||||||| ||||| |||||||||||    
T  37829928 gttcaactggtttgatctaagggttaaaggagttggaagtcctggcttcaaacccggacgaaggagtagatattaatcta 37830007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 31957890 - 31957936
Alignment:
Q  212 actggtttgagctaagagataaagagttggaggtcttgggttcaaac 258  Q
    |||||||||||||||| ||||| |||||||||||| |||||| ||||    
T  31957890 actggtttgagctaagggataaggagttggaggtcctgggttgaaac 31957936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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