View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_high_2 (Length: 771)
Name: NF3594_high_2
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 733; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 1 - 761
Target Start/End: Complemental strand, 43985881 - 43985121
Alignment:
| Q |
1 |
cgaaggctcgtgttcggaacagagcaacagaagaataaagcagcttacgagattcgtttgttaacaaggtcaagcattttcaacagagcttgtttgattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43985881 |
cgaaggctcgtgttcggaacagagcaacagaagaataaagcagcttacgagattcgtttgttaacaaggtcaagcattttcaacagagcttgtttgattg |
43985782 |
T |
|
| Q |
101 |
aagttggaactgtgccaccactgttggatcttttagctacggaggataaaaccactcaggagaatgcaatctctgctttactgaagctttcaaagtatgc |
200 |
Q |
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| T |
43985781 |
aagttggaactgtgccaccactgttggatcttttagctacggaggataaaaccactcaggagaatgcaatctctgctttactgaagctttcaaagtatgc |
43985682 |
T |
|
| Q |
201 |
aaccgggcctgaaaatataatagaccataacggtttaaatcccgttgtgtatgtactgaaaaatggacttagtcttgaagcccgtcaaattgcagctgct |
300 |
Q |
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| T |
43985681 |
aaccgggcctgaaaatataatagaccataacggtttaaagcccgttgtgtatgtactgaaaaatggacttagtcttgaagcccgtcaaattgcagcagct |
43985582 |
T |
|
| Q |
301 |
ataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaatcaagatgtgattcatggtttagttgaattggctaaagaaggaacaa |
400 |
Q |
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| T |
43985581 |
ataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaatcaagatgtgattcatggtttagttgaattggctaaagaaggaacaa |
43985482 |
T |
|
| Q |
401 |
cctgcgggaaaaagaatgcagtggttgccatttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaagccggtgctgttcacgcgcttgt |
500 |
Q |
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| T |
43985481 |
cctgcggaaaaaagaatgcagtggttgcgatttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaagccggtgctgttcacgcgcttgt |
43985382 |
T |
|
| Q |
501 |
ttctattttgaataccttgtgcaacaaggaagagcttgttactgaaactttggctgttcttgcggcacttgctgagaattttgatggagctaatgctgtt |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43985381 |
ttctattttgaataccttgtgcaacaaggaagagcttgttactgaaactctggctgttcttgcggcacttgctgagaattttgatggagctaatgctgtt |
43985282 |
T |
|
| Q |
601 |
ttggaagcttctgcattgccgttgattgctgggctgttgcgatctgctccttcgcgtgctgcaaaggaacattgtgtttcgatattgttgtctctatgtg |
700 |
Q |
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| T |
43985281 |
ttggaagcttctgcattgccgttgattactgggctgttgcgatctgctccttcgcgtgctgcaaaggaacattgtgtttcgatattgttgtctctatgtg |
43985182 |
T |
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| Q |
701 |
ttaatggtggtgtggatgttgctggtgttcttgctaaggatgttacacttatgcctttgct |
761 |
Q |
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| T |
43985181 |
ttaatggtggtgttgatgttgctggtgttcttgctaaggatgttacacttatgcctttgct |
43985121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 35205912 - 35205835
Alignment:
| Q |
277 |
gaagcccgtcaaattgcagctgctataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaat |
354 |
Q |
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| T |
35205912 |
gaagcccgtcgagttgcagctggtataatattttacctcacttcagtgaaagagtacagaaaattaataggcgaaaat |
35205835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 35206170 - 35206124
Alignment:
| Q |
13 |
ttcggaacagagcaacagaagaataaagcagcttacgagattcgttt |
59 |
Q |
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|||||||||||| ||||||| || ||||||||||| ||||||||||| |
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| T |
35206170 |
ttcggaacagaggaacagaaaaacaaagcagcttatgagattcgttt |
35206124 |
T |
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