View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3594_high_28 (Length: 250)

Name: NF3594_high_28
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3594_high_28
NF3594_high_28
[»] chr6 (29 HSPs)
chr6 (20-232)||(4563620-4563832)
chr6 (20-232)||(4592140-4592352)
chr6 (108-232)||(4585633-4585757)
chr6 (94-231)||(4579414-4579552)
chr6 (108-232)||(4560503-4560627)
chr6 (108-232)||(4613729-4613853)
chr6 (108-232)||(4557122-4557246)
chr6 (111-232)||(4480693-4480814)
chr6 (109-202)||(4570970-4571063)
chr6 (108-232)||(4574305-4574429)
chr6 (117-232)||(4504408-4504523)
chr6 (108-232)||(4598168-4598292)
chr6 (111-218)||(4617022-4617129)
chr6 (114-232)||(3171744-3171862)
chr6 (111-206)||(4492955-4493050)
chr6 (111-232)||(4516321-4516442)
chr6 (114-206)||(4267203-4267295)
chr6 (117-232)||(4490366-4490481)
chr6 (111-162)||(4515202-4515253)
chr6 (111-230)||(4601789-4601908)
chr6 (108-167)||(4606967-4607026)
chr6 (115-217)||(4392052-4392154)
chr6 (114-232)||(4622145-4622263)
chr6 (111-232)||(4461123-4461244)
chr6 (111-172)||(4505857-4505918)
chr6 (114-232)||(4625954-4626072)
chr6 (114-167)||(4299816-4299869)
chr6 (117-206)||(4469809-4469898)
chr6 (130-201)||(4568072-4568143)
[»] chr8 (3 HSPs)
chr8 (111-232)||(1674226-1674347)
chr8 (108-218)||(20863868-20863978)
chr8 (108-178)||(16686332-16686402)
[»] scaffold0477 (1 HSPs)
scaffold0477 (114-228)||(4701-4815)
[»] chr5 (2 HSPs)
chr5 (111-232)||(28000110-28000231)
chr5 (114-206)||(24103002-24103094)
[»] scaffold0288 (1 HSPs)
scaffold0288 (114-232)||(3730-3848)
[»] chr3 (1 HSPs)
chr3 (111-232)||(1281114-1281235)
[»] chr7 (1 HSPs)
chr7 (117-206)||(3086426-3086515)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 4563620 - 4563832
Alignment:
Q  20 atgacttcacttacatcagaacttaaattcaataggggaagatcaatgacttatcgttgaactgaattgcataaaaaagttacttaaattgattttgttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4563620 atgacttcacttacatcagaacttaaattcaataggggaagatcaattaattatcgttgaactgaattgcataaaaaagttacttaaattgattttgttt 4563719  T
Q  120 aagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgccttttgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||     
T  4563720 aagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactcaattgccttttgc 4563819  T
Q  220 cgcatcttctttc 232  Q
    |||||||||||||    
T  4563820 cgcatcttctttc 4563832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 4592140 - 4592352
Alignment:
Q  20 atgacttcacttacatcagaacttaaattcaataggggaagatcaatgacttatcgttgaactgaattgcataaaaaagttacttaaatt-gattttgtt 118  Q
    |||| |||||||||||||  ||||||||||||||||||||||||||| | |||| |||||||||  |||||||||||| ||||||||||| |||||| ||    
T  4592140 atgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaa-ttacttaaatttgattttatt 4592238  T
Q  119 taagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgccttttg 218  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||     
T  4592239 taagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgccttttt 4592338  T
Q  219 tcgcatcttctttc 232  Q
     | |||||||||||    
T  4592339 cctcatcttctttc 4592352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 4585633 - 4585757
Alignment:
Q  108 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 207  Q
    |||||||| |||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||     
T  4585633 ttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaactcg 4585732  T
Q  208 attgccttttgtcgcatcttctttc 232  Q
    ||||||||||| | |||||||||||    
T  4585733 attgccttttgcctcatcttctttc 4585757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 231
Target Start/End: Original strand, 4579414 - 4579552
Alignment:
Q  94 aaaagttacttaaatt-gattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgct 192  Q
    |||||| |||||| || |||||||||| || || |||||||| |||||||| |||||||||||||||||||| ||||||| |||||||| ||||||| |     
T  4579414 aaaagtcacttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccacc 4579513  T
Q  193 ttcttcttcaactcaattgccttttgtcgcatcttcttt 231  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  4579514 ttcttcttcaactcaattgccttttgcctcatcttcttt 4579552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 4560503 - 4560627
Alignment:
Q  108 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 207  Q
    |||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |||||||| | ||||||| || ||||||| |||     
T  4560503 ttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctcc 4560602  T
Q  208 attgccttttgtcgcatcttctttc 232  Q
    || |||||||| | |||||||||||    
T  4560603 atggccttttgcctcatcttctttc 4560627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 4613853 - 4613729
Alignment:
Q  108 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 207  Q
    |||||||||||| ||||  ||||| ||||||||||||||||||||||| |||||||||||||| | |||||||| |||||| || |||||||||||||||    
T  4613853 ttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaactca 4613754  T
Q  208 attgccttttgtcgcatcttctttc 232  Q
    ||||||||||| | ||| |||||||    
T  4613753 attgccttttgcctcattttctttc 4613729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 4557122 - 4557246
Alignment:
Q  108 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 207  Q
    ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||| |||||||| ||||||||| ||| |||||| ||||    
T  4557122 ttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctca 4557221  T
Q  208 attgccttttgtcgcatcttctttc 232  Q
    |||  |||||  | |||||||||||    
T  4557222 attatctttttccacatcttctttc 4557246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 4480693 - 4480814
Alignment:
Q  111 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 210  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||| |||| |||||| ||  ||||||||||||| ||     
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatg 4480792  T
Q  211 gccttttgtcgcatcttctttc 232  Q
    ||||||||   |||||||||||    
T  4480793 gccttttgcttcatcttctttc 4480814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 4570970 - 4571063
Alignment:
Q  109 tgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttca 202  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||||||    
T  4570970 tgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttca 4571063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 4574305 - 4574429
Alignment:
Q  108 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 207  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||  |||||||||||||||||| |||||||| | ||||| | |||||||||| ||||    
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctca 4574404  T
Q  208 attgccttttgtcgcatcttctttc 232  Q
    || || ||||| | |||||||||||    
T  4574405 atggctttttgcctcatcttctttc 4574429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 4504523 - 4504408
Alignment:
Q  117 tttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgccttt 216  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||||| |||  ||| |||| |||||| || |||||||||||||| || ||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttt 4504424  T
Q  217 tgtcgcatcttctttc 232  Q
    || | |||||||||||    
T  4504423 tgcctcatcttctttc 4504408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 4598168 - 4598292
Alignment:
Q  108 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 207  Q
    |||||| |||||||| || |||||||| |||||||| || ||||||||||||||||||||||||  |||||| | ||||||||| ||| ||||||| |||    
T  4598168 ttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaatca 4598267  T
Q  208 attgccttttgtcgcatcttctttc 232  Q
    |||| |||||| | ||| |||||||    
T  4598268 attgtcttttgcctcattttctttc 4598292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 4617022 - 4617129
Alignment:
Q  111 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 210  Q
    ||||||||||||||| || ||||| || ||||||| ||||||||||||||||||||| || | ||| ||||||||||| || |||||||||||||| ||     
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg 4617121  T
Q  211 gccttttg 218  Q
    ||||||||    
T  4617122 gccttttg 4617129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 3171744 - 3171862
Alignment:
Q  114 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcc 213  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||  ||| || | |||||| || |||||||||||||| || |||    
T  3171744 ttgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggcc 3171843  T
Q  214 ttttgtcgcatcttctttc 232  Q
     |||| | |||||||||||    
T  3171844 ctttgcctcatcttctttc 3171862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 4492955 - 4493050
Alignment:
Q  111 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactc 206  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |   |||| |||||| || ||||| ||||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactc 4493050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 4516321 - 4516442
Alignment:
Q  111 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 210  Q
    ||||||||| ||||  |||||||| |||||||| ||||||||||  ||||||||||| || | ||| |||| |||||| || ||||||||||| || ||     
T  4516321 attttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatg 4516420  T
Q  211 gccttttgtcgcatcttctttc 232  Q
    |||||||| | |||||||||||    
T  4516421 gccttttgcctcatcttctttc 4516442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 4267295 - 4267203
Alignment:
Q  114 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactc 206  Q
    |||||||||||  |||||||| || |||||||||||||||||||||||| |||| |||| ||| |||||||| || || ||| ||||||||||    
T  4267295 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactc 4267203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 4490481 - 4490366
Alignment:
Q  117 tttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgccttt 216  Q
    ||||||||  || ||||| |||||||||||||||||||||||||||| ||| ||   |||||||| |||| | || ||||||||||||||  | ||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttt 4490382  T
Q  217 tgtcgcatcttctttc 232  Q
    || | |||||||||||    
T  4490381 tgcctcatcttctttc 4490366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 4515253 - 4515202
Alignment:
Q  111 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaa 162  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaa 4515202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 4601789 - 4601908
Alignment:
Q  111 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 210  Q
    ||||||||||||||| |||||||| || |||||||||| |||| ||||||||||||| ||   ||| ||| ||||||  ||  ||||||||||||| ||     
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatg 4601888  T
Q  211 gccttttgtcgcatcttctt 230  Q
    |||||||| | |||||||||    
T  4601889 gccttttgcctcatcttctt 4601908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 4607026 - 4606967
Alignment:
Q  108 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacc 167  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||||    
T  4607026 ttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaacc 4606967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 4392154 - 4392052
Alignment:
Q  115 tgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcct 214  Q
    ||||||||||| |||||||| |||| |||||||||||||||| ||||| |||| |||| ||  |||| |||||  || |||||||||||||| || ||||    
T  4392154 tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgcct 4392055  T
Q  215 ttt 217  Q
    |||    
T  4392054 ttt 4392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 4622145 - 4622263
Alignment:
Q  114 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcc 213  Q
    |||||||||||  |||||||| || ||||||||||||||  ||||||||||||| ||||  || ||  |||| || || |||| ||||||||| || |||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc 4622244  T
Q  214 ttttgtcgcatcttctttc 232  Q
    ||||||| |||||||||||    
T  4622245 ttttgtctcatcttctttc 4622263  T

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Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 4461123 - 4461244
Alignment:
Q  111 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 210  Q
    ||||||||||||||| || ||||| || ||||||||||||||| ||||||||  |||||||| ||| || | ||||||| | |||||||| || || ||     
T  4461123 attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatg 4461222  T
Q  211 gccttttgtcgcatcttctttc 232  Q
     ||||||| | |||||||||||    
T  4461223 accttttgcctcatcttctttc 4461244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 4505857 - 4505918
Alignment:
Q  111 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccag 172  Q
    ||||||||||||||| |||||||| || |||||||||||||||||| |||||||||| ||||    
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccag 4505918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 4625954 - 4626072
Alignment:
Q  114 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcc 213  Q
    |||||||||||| || || || |||| ||| ||||  ||||||||||||||||| || |  ||  |||||||||| || |||||||||||||| || |||    
T  4625954 ttgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggcc 4626053  T
Q  214 ttttgtcgcatcttctttc 232  Q
    ||||| | |||||||||||    
T  4626054 ttttgcctcatcttctttc 4626072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 4299869 - 4299816
Alignment:
Q  114 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacc 167  Q
    ||||||||||| ||||||||| || |||||||||||||||||||| ||||||||    
T  4299869 ttgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaacc 4299816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 4469809 - 4469898
Alignment:
Q  117 tttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactc 206  Q
    ||||||||| || ||||| || ||||||||||||||| ||||||||  |||||||| ||| || | ||||||| | |||||||| |||||    
T  4469809 tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactc 4469898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 4568072 - 4568143
Alignment:
Q  130 tccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttc 201  Q
    ||||| ||||||||||||||||||||||||||| || | |||| ||| |||| || ||| || |||||||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttc 4568143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 1674226 - 1674347
Alignment:
Q  111 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 210  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || | ||| ||||||||||| || ||||||||||| || ||     
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatg 1674325  T
Q  211 gccttttgtcgcatcttctttc 232  Q
    |||||||| | |||||| ||||    
T  1674326 gccttttgcctcatcttttttc 1674347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 20863978 - 20863868
Alignment:
Q  108 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 207  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |||| | | ||| |||| |||||| || |||||||||||||||    
T  20863978 ttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttcttcaactca 20863879  T
Q  208 attgccttttg 218  Q
     ||| ||||||    
T  20863878 tttgtcttttg 20863868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 16686402 - 16686332
Alignment:
Q  108 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcg 178  Q
    ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||| |||||    
T  16686402 ttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcg 16686332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 4815 - 4701
Alignment:
Q  114 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcc 213  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||||| || ||||  || ||||||||||| || |||||||||||||| || |||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggcc 4716  T
Q  214 ttttgtcgcatcttc 228  Q
    ||||| | |||||||    
T  4715 ttttgcctcatcttc 4701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 28000231 - 28000110
Alignment:
Q  111 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 210  Q
    ||||||||||| ||| || ||||| |||||||||||||||||||||||||||||||| || | ||| ||||||||||| || || ||||||||||| ||     
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatg 28000132  T
Q  211 gccttttgtcgcatcttctttc 232  Q
    |||||||| | |||||| ||||    
T  28000131 gccttttgcctcatcttttttc 28000110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 24103002 - 24103094
Alignment:
Q  114 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactc 206  Q
    |||||||||||  |||||||| || |||||||||||||||||||||||| |||| |||| ||| |||||||| || || |||||||| |||||    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactc 24103094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 3848 - 3730
Alignment:
Q  114 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcc 213  Q
    ||||||||||||||||||||| || |||||||||| |||||||||||||| ||| || | ||| ||||||||||| || |||||||| ||||| |  |||    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggcc 3749  T
Q  214 ttttgtcgcatcttctttc 232  Q
    ||||| | |||||||||||    
T  3748 ttttgcctcatcttctttc 3730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 1281114 - 1281235
Alignment:
Q  111 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 210  Q
    ||||||||||||||| |  ||||| ||||||||||| |||||||||||||||||||| || | ||| ||||||||||||||   ||||||||| || ||     
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatg 1281213  T
Q  211 gccttttgtcgcatcttctttc 232  Q
    ||||||| || ||| |||||||    
T  1281214 gccttttctctcatattctttc 1281235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 3086426 - 3086515
Alignment:
Q  117 tttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactc 206  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||||| ||    || |||||||| || ||||||||||| |||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactc 3086515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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