View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_high_3 (Length: 694)
Name: NF3594_high_3
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 19 - 682
Target Start/End: Complemental strand, 26615501 - 26614838
Alignment:
| Q |
19 |
atttgaacagtcgagcttaggttttaatataggtaaacttgtggcttgggttatatagtttgatgatggcttgataagcagttgtttgttgctttcttcg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615501 |
atttgaacagtcgagcttaggttttaatataggtaaacttgtggcttgggttatatagtttgatgatggcttgataagcagttgtttgttgctttcttcg |
26615402 |
T |
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| Q |
119 |
gcaatactcaataccataaaaatatctatgtatatgcttcttgaccaaagtttaattactgcattgcacgaggtgtttcttctaggttaaaaaagaatgt |
218 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26615401 |
gcaatactcaataccataaaaat--ctatgtatatgcttcttgaccaaagtttaattactgcattgcatgaggtgtttcttctaggttaaaaaagaatgt |
26615304 |
T |
|
| Q |
219 |
catattgattcattagatatgactaatgactgcaatgaatttttgtcaaaatatattatattgacaggtgctgcaggaaaaaggcattcatatatgggat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615303 |
catattgattcattagatatgactaatgactgcaatgaatttttgtcaaaatatattatattgacaggtgctgcaggaaaaaggcattcatatatgggat |
26615204 |
T |
|
| Q |
319 |
ggcaatgcatccagggaataccttgacaggcaagcatgactattgactagtttatttattgcaa--nnnnnnnnnctctcagttattaactggatttgca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26615203 |
ggcaatgcatccagggaataccttgacaggcaagcatgactaatgactagtttatttattgcaattttttttcttctctcagttattaactggatttgca |
26615104 |
T |
|
| Q |
417 |
atttattttacagcattggtttgaaagaaagggaagaggctgacttaggacctgtttatgggtttcagtggaggcattttggtgcaaggtaggtggattg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615103 |
atttattttacagcattggtttgaaagaaagggaagaggctgacttaggacctgtttatgggtttcagtggaggcattttggtgcaaggtaggtggattg |
26615004 |
T |
|
| Q |
517 |
cgcctttgtctgtgttcatcataacactgtattttgtgggattggttgtctttttgctaactgtctcgcattctgtaggtatactaacatgcatgatgac |
616 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615003 |
cgcctttttctgtgttcatcataacactgtattttgtgggattggttgtctttttgctaactgtctcgcattctgtaggtatactaacatgcatgatgac |
26614904 |
T |
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| Q |
617 |
tactccggccaaggatttgatcagctgttagatgttattaacaagataaaacacaatcctgatgat |
682 |
Q |
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| T |
26614903 |
tactccggccaaggatttgatcagctgttagatgttattaacaagataaaacacaatcctgatgat |
26614838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 424 - 515
Target Start/End: Complemental strand, 5316841 - 5316750
Alignment:
| Q |
424 |
ttacagcattggtttgaaagaaagggaagaggctgacttaggacctgtttatgggtttcagtggaggcattttggtgcaaggtaggtggatt |
515 |
Q |
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|||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| | ||| ||||||| |
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| T |
5316841 |
ttacagcattggtttgtcagagagggaagagggtgatttaggacctgtttatgggtttcagtggaggcactttggtgccaagtaagtggatt |
5316750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 5317000 - 5316918
Alignment:
| Q |
274 |
ttatattgacaggtgctgcaggaaaaaggcattcatatatgggatggcaatgcatccagggaataccttgacaggcaagcatg |
356 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||| |
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| T |
5317000 |
ttatattgacaggtgttgcagcaaaaaggcattcatatatgggatgataatgcatccagggagttccttgacaggcgagcatg |
5316918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 592 - 682
Target Start/End: Complemental strand, 5316677 - 5316587
Alignment:
| Q |
592 |
taggtatactaacatgcatgatgactactccggccaaggatttgatcagctgttagatgttattaacaagataaaacacaatcctgatgat |
682 |
Q |
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| T |
5316677 |
taggtatactaacatgcatggtgactatgccaaccaaggacttgatcagcttttagatgttatcaacaagataaagcataatcccgatgat |
5316587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 424 - 515
Target Start/End: Complemental strand, 54758160 - 54758069
Alignment:
| Q |
424 |
ttacagcattggtttgaaagaaagggaagaggctgacttaggacctgtttatgggtttcagtggaggcattttggtgcaaggtaggtggatt |
515 |
Q |
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|||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| | ||| ||||||| |
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| T |
54758160 |
ttacagcattggtttgtcagagagggaagagggtgatttaggacctgtttatgggtttcagtggaggcactttggtgccaagtaagtggatt |
54758069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 54758319 - 54758237
Alignment:
| Q |
274 |
ttatattgacaggtgctgcaggaaaaaggcattcatatatgggatggcaatgcatccagggaataccttgacaggcaagcatg |
356 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||| |
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| T |
54758319 |
ttatattgacaggtgttgcagcaaaaaggcattcatatatgggatgataatgcatccagggagttccttgacaggcgagcatg |
54758237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 592 - 682
Target Start/End: Complemental strand, 54757996 - 54757906
Alignment:
| Q |
592 |
taggtatactaacatgcatgatgactactccggccaaggatttgatcagctgttagatgttattaacaagataaaacacaatcctgatgat |
682 |
Q |
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|||||||||||||||||||| |||||| || ||||||| |||||||||| ||||||||||| ||||||||||| || ||||| |||||| |
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| T |
54757996 |
taggtatactaacatgcatggtgactatgccaaccaaggacttgatcagcttttagatgttatcaacaagataaagcataatcccgatgat |
54757906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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