View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3594_high_39 (Length: 215)
Name: NF3594_high_39
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_high_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 47415189 - 47415121
Alignment:
| Q |
13 |
agcagagaactcgtttttctcatactccagtttctcgatgaagagaaattcaaggagtctgttcatagg |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47415189 |
agcagagaactcgtttttctcatactccagtttctcgatgaagagaaattcaaggagtctgttcatagg |
47415121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 37249015 - 37249073
Alignment:
| Q |
16 |
agagaactcgtttttctcatactccagtttctcgatgaagagaaattcaaggagtctgt |
74 |
Q |
| |
|
|||||| | |||||||||||||| |||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
37249015 |
agagaattggtttttctcatacttcagtttcttgatgaggagaagttcaaggaatctgt |
37249073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University