View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_high_6 (Length: 494)
Name: NF3594_high_6
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 69 - 468
Target Start/End: Original strand, 31532489 - 31532886
Alignment:
| Q |
69 |
gttacggtttctcaggtgactatgagtcaaagaaagtgatagaaaatttggtgtttcccactaaaatgtaatgaccactttctacacttttggtgcaaaa |
168 |
Q |
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| T |
31532489 |
gttacggtttctcaggtgactatgagtcaaagaaagtgatagaaaatttagtgtttcccactaaaatgtcatgaccactttctacacttttggtgcaaaa |
31532588 |
T |
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| Q |
169 |
tcaaatattnnnnnnngaaaataacattgattcacannnnnnnnnnnnctctcttttagtagagagataccagtttactaccaatttatcatttctaata |
268 |
Q |
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| T |
31532589 |
tcaaatatgaaaaaaagaaaataacattgattcacattttttatttttctctcttttagtagagagataccagtttactaccaatttatcatttctaata |
31532688 |
T |
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| Q |
269 |
ttaaccatttatg--tctctggtttaagatgaagttcatttaaattattaactttccatttcaatttctctgtttccaaaatcattaatatgaaggtcaa |
366 |
Q |
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| T |
31532689 |
ttaaccatttatgtctctctggtttaagatgaagttcatttaaattattaac-ttccatttcaatttctc---ttccaaaatcattaatatgaaggtcaa |
31532784 |
T |
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| Q |
367 |
ttattgccatctacaccacatcatcatagnnnnnnnatgtcatagaaactgcaacaagaacggtatatgtttgaaatgacaatgagtttagcaaaatagt |
466 |
Q |
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| T |
31532785 |
ttattgccatctacaccacatcatcatagtttttttatgtcatagaaactgcaacaagaacggtatatgtttgaaatgacaatgagtttagcaaaatagt |
31532884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31532414 - 31532464
Alignment:
| Q |
1 |
atagacagaaaaaggcaccaaacaggggcattttggtcactcaacaattag |
51 |
Q |
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| T |
31532414 |
atagacagaaaaaggcaccaaacaagggcattttggtcactcaacaattag |
31532464 |
T |
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