View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_high_8 (Length: 425)
Name: NF3594_high_8
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 14423125 - 14422725
Alignment:
| Q |
12 |
agagaccactcattt-cattaagtgaagtaaaaagagaactgaagattaattttgtctccctaaaagtactagagcgtgcttcttttacacccaaaactt |
110 |
Q |
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| T |
14423125 |
agagaccactcattttcattaagtgaagtaaaaagagaactgaagattaattttgtctccctaaaaatactagagcatgcttcttttacacccaaaactt |
14423026 |
T |
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| Q |
111 |
acctagggaaatttttctcggtaactcaaaaatagtggtattattgtagttgcaagtataataaagtgcgatcctttggaaaatttccctcggtaaataa |
210 |
Q |
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| T |
14423025 |
acctagggaaatttttctcggtaactcaaaaatagtggtattattgtagttgcaagtataataaagtgcgatcctttggaaaatttccctcggtaaataa |
14422926 |
T |
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| Q |
211 |
catttttagaaattgtgtccatgagtaatttttcgtgggtaatccatcatattcatgcagtgatcaaagccatttcttttaaaaggagaggctaatatga |
310 |
Q |
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| T |
14422925 |
catttttagaaattgtgtccataagtaatttctcgtgggtaatccatcatattcatgcagtgatcaaagccatttcttttaaaaggagaggctaatatgg |
14422826 |
T |
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| Q |
311 |
aaagattgaagggatgctgatacgagagcaagtatcttgttttgttaaatataggactatgattttggcttttctatggtacaatcacatgggacttgtt |
410 |
Q |
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| T |
14422825 |
aaagattgaagggatgctgatacgagagcaagtatcttgttttgttaaatataggactaggattttggcttttctatggtacaatcacatgggacttgtt |
14422726 |
T |
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| Q |
411 |
g |
411 |
Q |
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| T |
14422725 |
g |
14422725 |
T |
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