View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3594_low_10 (Length: 399)
Name: NF3594_low_10
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 5 - 383
Target Start/End: Original strand, 7687506 - 7687884
Alignment:
| Q |
5 |
taggtcaaaatatttgtgcagtactcgaattaaatcttgattgaaacaatcatcggttagtgaggacccaattactcatgtagtagaagatctaaaccaa |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7687506 |
taggtcaaaatatttttgcagtactcgaattaaatcttgattgaaacaatcatcggttagtgaggacccgattactcatgtagtagaagatctaaaccaa |
7687605 |
T |
|
| Q |
105 |
aaagaagtctagatctgtttggttgatgtgctttagcaaattgttttggtagtacttgagttcaatctttggttagaacaatactttacttaatttatga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7687606 |
aaagaagtctagatctgtttggttgatgtgctttagcaaattgttttggtagtacttgagttcaatctttggttagaacaatactttacttaatttatta |
7687705 |
T |
|
| Q |
205 |
tcaaactgtgaattagtgagtacccaatttcctcttgaactagaagatcaaaacaatttcttctagatttatttggttatgcgccttagctaaggcctaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7687706 |
tcaaactgtgaattagtgagtacccaatttcctcttgaactagaagatcaaaacaatttcttctagatttatttggttatgcgccttagctaaggcctaa |
7687805 |
T |
|
| Q |
305 |
ttgttcgggtagtactcgagttcaatattggttggaataataattggtcagactttacttaatttatactcgcactttt |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7687806 |
ttgttcgggtagtactcgagttcaatattggttggaataataattggtcagactttacttaatttatactcgcactttt |
7687884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University