View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_11 (Length: 388)
Name: NF3594_low_11
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 52997712 - 52998091
Alignment:
| Q |
11 |
cacagagaacttaaatggccttatttgttttatttggtaaaaatggataacataacatatgcttcatagaaacataactgtatcaaactttgtgtatggg |
110 |
Q |
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| T |
52997712 |
cacagagaacttaaatggccttatttgttttatttggtaaaaatggataacataacatatgcttcatagaaacataactgtaacaaactttgtgtatggg |
52997811 |
T |
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| Q |
111 |
ctctcattgtttcttccttcttgggttactgcagcaggatatatactgtcgcaggcattgagtnnnnnnngatggaccaccttagattttctcaagataa |
210 |
Q |
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| T |
52997812 |
ctctcattgtttcttccttcttgggttactgcagcaggatgtatactgtcgcaggcattgagtcccccccgatggaccaccttagattttctcaagataa |
52997911 |
T |
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| Q |
211 |
aatttaatcaaacttacttatatgnnnnnnnnnnnnnnaattatattcatcttttgggcagtttcaaggtgaaatgcgcctcaaatacaagtatagataa |
310 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
52997912 |
aatttaatgaaacttacttatatgtttttttcctttttaattatattcatcttttgggctgtttcaaggtgaaatgcgcctcaaatacaagtaaagataa |
52998011 |
T |
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| Q |
311 |
aagtttagta-----nnnnnnnnnctttctttctgacaagagataaaagtttaatatttctactcatataaatttttctt |
385 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52998012 |
aagtttagtattttttttttttttttttctttctgacaagagataaaagtttaatatttctactcatataaatttttctt |
52998091 |
T |
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