View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_15 (Length: 356)
Name: NF3594_low_15
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 30605484 - 30605149
Alignment:
| Q |
1 |
aaatggaaactcaaaacaagtttatagaaagtaacagtagtaagtacctgtttcaggattgtagagtgaccaaatcttcttacgaaactccaagtcagcg |
100 |
Q |
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| T |
30605484 |
aaatggaaactcaaaacaagtttatagaaagtaacagtagtaagtacctgtttcaggattgtagagtgaccaaatcttcttacgaaactccaagtcagcg |
30605385 |
T |
|
| Q |
101 |
agggagattctaacccaaacacgagtggtgaacccgaatttcttgggcttagaatgaaggatggagccacccatacccgaaacaagtagaaccgggtcac |
200 |
Q |
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| T |
30605384 |
agggagattctaacccaaacacgagtggtgaacccgaatttcttgggcttagaatgaaggatggagccacccatacccgaaacaagtagaaccgggtcac |
30605285 |
T |
|
| Q |
201 |
gatccgctagtggaacttcggaagtttcatctccaaaacacggacaaaaacccatctgctgcagtgcggtgagggaattgttagttagttcagttgtact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30605284 |
gatccgctagtggaacttcggaagtttcatctccaaaacacggacaaaaacccatctgctgcagtgcggtgagggaattgttagttagttcagttgtact |
30605185 |
T |
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| Q |
301 |
aaccagactctgctttagttgagtgaagttgctact |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
30605184 |
aaccagactctgctttagttgagtgaagttgctact |
30605149 |
T |
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