View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_17 (Length: 336)
Name: NF3594_low_17
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 11149785 - 11149478
Alignment:
| Q |
16 |
ctcttccaaatgtatgagcacctgaaatcgagaaacatatataaatcaataatcaaatatattattattgtaacattggcgtcatcattgtaacgaccaa |
115 |
Q |
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| T |
11149785 |
ctcttccaaatgtatgagcacctgaaatcgagaaacatatataaatcaataatcaaatatattattattgtaacattggcgtcatcattgtaacgaccaa |
11149686 |
T |
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| Q |
116 |
ttagannnnnnnaaacaaaaacttttaaaatgttacatacccgagagtgcaaccagatcagtagtatcgagaccttgagcagcaaatgcagctttaagtt |
215 |
Q |
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| T |
11149685 |
ttagatttttttaaacaaaaactttaaaaatgttacatacccgagagtgcaaccagatcagtagtatcgagaccttgagcagcaaatgcagctttaagtt |
11149586 |
T |
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| Q |
216 |
gatcagtagtattgaaaggagctggaagatttttattagcaagtaattggtttgctgttaaaccatctcttcttcctaaaggaaccttccagtcaggacc |
315 |
Q |
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| T |
11149585 |
gatcagtagtattgaaaggagctggaagatttttattagcaagtaattggtttgctgttaaaccatctcttcttcctaaaggaactttccagtcaggacc |
11149486 |
T |
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| Q |
316 |
atctgcct |
323 |
Q |
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| T |
11149485 |
atctgcct |
11149478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 128 - 315
Target Start/End: Complemental strand, 11145738 - 11145551
Alignment:
| Q |
128 |
aaacaaaaacttttaaaatgttacatacccgagagtgcaaccagatcagtagtatcgagaccttgagcagcaaatgcagctttaagttgatcagtagtat |
227 |
Q |
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| T |
11145738 |
aaacaaaaactttaaaaatgttacatacccgagagtgcaactagatcagtagtactgaggccttgagaagcaaatgcagctttgagttgatctaatgagt |
11145639 |
T |
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| Q |
228 |
tgaaaggagctggaagatttttattagcaagtaattggtttgctgttaaaccatctcttcttcctaaaggaaccttccagtcaggacc |
315 |
Q |
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| T |
11145638 |
taaaaggagctggaagattttgattagcaagtgattggtttgctgttaaaccatctcttcttcctaaaggaactttccaatcaggacc |
11145551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 323
Target Start/End: Complemental strand, 11137400 - 11137228
Alignment:
| Q |
151 |
catacccgagagtgcaaccagatcagtagtatcgagaccttgagcagcaaatgcagctttaagttgatcagtagtattgaaaggagctggaagattttta |
250 |
Q |
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| T |
11137400 |
catacctgagagagcaactagatcagtagtactgaggccttgagcagcaaatgcagatttaagttgatccaacgaattgaatggagccggaagattttga |
11137301 |
T |
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| Q |
251 |
ttagcaagtaattggtttgctgttaaaccatctcttcttcctaaaggaaccttccagtcaggaccatctgcct |
323 |
Q |
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| T |
11137300 |
ttagcgagcgattggttggcggttaaaccatcccttcttcctaagggaaccttccaattaggaccatctgcct |
11137228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 11156344 - 11156198
Alignment:
| Q |
154 |
acccgagagtgcaaccagatcagtagtatcgagaccttgagcagcaaatgcagctttaagttgatcagtagtattgaaaggagctggaagatttttatta |
253 |
Q |
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| T |
11156344 |
acccgagagtgcaactagatcagtagtattcaggccttgggcagtaaatgcagctttaagttgaaccaaggtattgaatggggccggaagattttgattt |
11156245 |
T |
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| Q |
254 |
gcaagtaattggtttgctgttaaaccatctcttcttcctaaaggaac |
300 |
Q |
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| T |
11156244 |
gcaagtgtccggtttgcagttaaaccatcccttcttcctaaaggaac |
11156198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 11156453 - 11156392
Alignment:
| Q |
16 |
ctcttccaaatgtatgagcacctgaaatcgagaaacatatataaatcaataatcaaatatat |
77 |
Q |
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| T |
11156453 |
ctcttccaaacgtatgagcacctgaaaacgagaaacatatataaatcaataatcatatatat |
11156392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 11172441 - 11172362
Alignment:
| Q |
238 |
tggaagatttttattagcaagtaattggtttgctgttaaaccatctcttcttcctaaaggaaccttccagtcaggaccat |
317 |
Q |
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| T |
11172441 |
tggaagatttatattagcaagggttagatttgctgttaaactatctcttcttcctaatggcactttccaatcaggaccat |
11172362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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