View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3594_low_18 (Length: 319)
Name: NF3594_low_18
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 24731359 - 24731075
Alignment:
| Q |
15 |
gaaagtatgaatgagacaggtcctttctgctgacagactacttc-atattttgagactctataaagcaat-tgtcaagtcctatcctagatttcggaaca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| || || ||||||| ||||||||||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
24731359 |
gaaagtatgaatgagacaggtcctttctgctgacagactgcttccattttctgagactttataaagcaatctgtcaagtcatatcctatatttcggaaca |
24731260 |
T |
|
| Q |
113 |
aaaaattaagattacaggataaagttnnnnnnnnnnnngtgaaatttcatatgttgttacaaaactgactatattttaacagattaccaaaaattacaat |
212 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24731259 |
aaaaattaagattaccgaataaagttaaaaaaata---gtgaaatttcatat----ttacaaaactgactatattttaacagattaccaaaaattacaat |
24731167 |
T |
|
| Q |
213 |
tatattaacgccagcctaatcaacgatgtaaccagtaattatatttacaattttttgtataagnnnnnnnccatgattgaaagaatattctt |
304 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24731166 |
tatattaacggcagcctaatcaacgatgtaaccagtaattatatttacaattttttgtataaaaaaaaaaccatgattgaaagaatattctt |
24731075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 176 - 306
Target Start/End: Complemental strand, 7424419 - 7424289
Alignment:
| Q |
176 |
actgactatattttaacagattaccaaaaattacaattatattaacgccagcctaatcaacgatgtaaccagtaattatatttacaattttttgtataag |
275 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7424419 |
actgactatattttaacagattatcaaaaattacaattatattaacggcagcctaatcaacgatgtaaccagtaattatatttacaattttttgtataaa |
7424320 |
T |
|
| Q |
276 |
nnnnnnnccatgattgaaagaatattcttct |
306 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7424319 |
agaaaaaccatgattgaaagaatattcttct |
7424289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 25876718 - 25876811
Alignment:
| Q |
180 |
actatattttaacagattaccaaaaattacaattatattaacgccagcctaatcaacgatgtaaccagtaattatatttacaattttttgtata |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||||||||||||||||||| |
|
|
| T |
25876718 |
actatattttaacagattaccaaaaattacaattatattaacggcagcctaatcaacaatgtaatcagtaactatatttacaattttttgtata |
25876811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 42544680 - 42544778
Alignment:
| Q |
176 |
actgactatattttaacagattaccaaaaattacaattatattaacgccagcctaatcaacgatgtaaccagtaattatatttacaattttttgtataa |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42544680 |
actgactatattttaacagattaccaaaaattacaattatattaacggcagcctaatcaacgatgtaaccagtaattatatttacaattttttgtataa |
42544778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University