View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_21 (Length: 288)
Name: NF3594_low_21
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 29438844 - 29438567
Alignment:
| Q |
1 |
aatgttacagtattaatttcatgaccggtagaatattaataccatgatattcaaaaataactccgtagagttataccttctttggtaccaagtgttactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29438844 |
aatgttacagtattaatttcatgaccggtagaatattaataccatcatattcaaaaataactccgtagagttataccttctttggtgacaagtgttactt |
29438745 |
T |
|
| Q |
101 |
gtctacacagtatggctgtggtaataaatatattattcaatttcagggtgcagttattcaattgccatcacagacattgctgctatttgtttctgaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29438744 |
gtctacacagtatggctgtggtaataaatatattattcaatttcagggtgcagttattcaattgccatcacagacattgctgctatttgtttctgaaaaa |
29438645 |
T |
|
| Q |
201 |
cccaaccagttgattgggatgtttattcctcaggtaacatatagtcgttgatttttcctctgatgggttacacctttg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29438644 |
cccaaccagttgattgggatgtttattcctcaggtaacatatagtcgttgatttttcctctgatgggttacacctttg |
29438567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 22531324 - 22531418
Alignment:
| Q |
92 |
gtgttacttgtctacacagtatggctgtggtaataaatatattattcaatttcagggtgcagttattcaattgccatcacagacattgctgctat |
186 |
Q |
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| T |
22531324 |
gtgttacttgtctatacactatggctgtggtaataaacatattatctaatttcagtgtgcagttattcaattgcaatcacagacgttgctactat |
22531418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 22534670 - 22534736
Alignment:
| Q |
130 |
atattattcaatttcagggtgcagttattcaattgccatcacagacattgctgctatttgtttctga |
196 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
22534670 |
atattatctaatttcagtgtgcagttattcaattgccatcacagactttgctactatctgtttctga |
22534736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 22525498 - 22525545
Alignment:
| Q |
139 |
aatttcagggtgcagttattcaattgccatcacagacattgctgctat |
186 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||| |||| |
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| T |
22525498 |
aatttcagtgtgcagttattcaattgccatcacagacgttgctactat |
22525545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 2785444 - 2785411
Alignment:
| Q |
148 |
gtgcagttattcaattgccatcacagacattgct |
181 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
2785444 |
gtgcagttattcaattgccatcacagacgttgct |
2785411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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