View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_25 (Length: 257)
Name: NF3594_low_25
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_25 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 42848379 - 42848630
Alignment:
| Q |
6 |
aggagcagagaaccacggcagattatgtacaaagtacaaaccgaaaaaattaggcaaagaaccacggcagattatgtacatagtacaacctgaaaaaatt |
105 |
Q |
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| T |
42848379 |
aggagcaaagaaccacggcagattatgtacgaagtacaaaccgaaaaaattaggcaaagaaccacggcagattatgtacatagtacaacctgaaaaaatt |
42848478 |
T |
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| Q |
106 |
agactaaagttaaatatgtaccatcttatcattgttgcttatgatttgagcaaatgcaaatcaaagatattgtacatcctaatttccgatgcctgagtag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
42848479 |
agactaaagttaaatatgtaccatcttatcattgttgcttatgatttgagcaaatgcaaatcaaagatattgtaaatcctaatttccgatgcccgagtag |
42848578 |
T |
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| Q |
206 |
tttagtacttatgtaccatcgaattatgtttacacacgaaaaaagcttaagc |
257 |
Q |
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| T |
42848579 |
tttagtacttatgtaccatcgaattatgtttacacacgaaaaaagattaagc |
42848630 |
T |
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