View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_26 (Length: 253)
Name: NF3594_low_26
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 29438874 - 29439102
Alignment:
| Q |
7 |
agttttattaatgattaagaaccaaaaggaattgagttcttgagctgagatgcccacagtatcatacctcaatttcactatttaggggaagaatatcagg |
106 |
Q |
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| T |
29438874 |
agttttattaatgattaagaaccaaaaggaattgagttcttgagcttagatgcccacagtatcatacctcaatttcattatttaggggaagaatatcagg |
29438973 |
T |
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| Q |
107 |
ggagaaaacattgacattctaactaagaaaacaacccggaatttaaaacaagtgggtttaaattagaaactcagaaataacctaccagcttcttttcctt |
206 |
Q |
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| T |
29438974 |
ggagaaaacattgacattctaactaagaaaacaacccgaaatttaaaacaagtgggtttaaattagaaactcagaaataacctaccagcttcttttcctt |
29439073 |
T |
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| Q |
207 |
caggtgactaagagaacgacctgggttca |
235 |
Q |
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| T |
29439074 |
caggtgactaagagaacgacctgggttca |
29439102 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 22524165 - 22524112
Alignment:
| Q |
166 |
aaattagaaactcagaaataacctaccagcttcttttccttcaggtgactaaga |
219 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||| ||| |||| |||| |
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| T |
22524165 |
aaattagaaactcataaagaacctaccagcttcttttcctgcagctgaccaaga |
22524112 |
T |
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