View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_27 (Length: 251)
Name: NF3594_low_27
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 42951005 - 42950763
Alignment:
| Q |
8 |
tgaaatgaacgggaatataacttctaaagcagctgaacttgtatttggtaggagcataatcttaagcaaaaaagcagcttacatcgaagaaaaataatgt |
107 |
Q |
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| T |
42951005 |
tgaaacgaacgggaatataacttctaaagcagctgaacttgtatttggtaggagcataatcttaagcaagaaagcagcttacatcgaagaaaaataatgt |
42950906 |
T |
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| Q |
108 |
tatgaagacaaacggatgatannnnnnnnngaatggcaaatgttagtagttattacctaagttacaaaatataaacaaaaatgagttaaagaaagttgac |
207 |
Q |
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| T |
42950905 |
tatgaagacaaacggatgat-tttttttttgaatggcaaatgttagtagttattacctcagttacaaaatataaactaaaatgagttaaagaaagttgat |
42950807 |
T |
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| Q |
208 |
tgatatatttgggccaaattttgaaccaaatacatcaaacttgt |
251 |
Q |
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| T |
42950806 |
tgatatatttgggccaaattttgaaccaaatacatcaaacttgt |
42950763 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 8637338 - 8637265
Alignment:
| Q |
168 |
gttacaaaatataaacaaaaatgagttaaagaaagttgactgatatatttgggccaaattttgaaccaaatacatcaa |
245 |
Q |
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| T |
8637338 |
gttacaaaatataagcaaaattgagtcaaagaaaattga----tgtatttggaccaaattttgaaccaaatatatcaa |
8637265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 51713819 - 51713781
Alignment:
| Q |
168 |
gttacaaaatataaacaaaaatgagttaaagaaagttga |
206 |
Q |
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| T |
51713819 |
gttacaaaatataagcaaaaatgagttaaagaaaattga |
51713781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 7875233 - 7875196
Alignment:
| Q |
169 |
ttacaaaatataaacaaaaatgagttaaagaaagttga |
206 |
Q |
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| T |
7875233 |
ttacaaaatataagcaaaaatgagttaaagaaaattga |
7875196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 38368793 - 38368862
Alignment:
| Q |
173 |
aaaatataaacaaaaatgagttaaagaaagttgactgatatatttgggccaaattttgaaccaaatacatcaaa |
246 |
Q |
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||||||||||||||| | ||||||| |||||||| |||||||| | |||||||||| ||||||||||||| |
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| T |
38368793 |
aaaatataaacaaaagtaagttaaaaaaagttga----tatatttgaactaaattttgaatcaaatacatcaaa |
38368862 |
T |
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