View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_32 (Length: 247)
Name: NF3594_low_32
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 23173231 - 23173000
Alignment:
| Q |
1 |
tgataagctattttaataaaaataacaaagtcgttaactattctcacaaggacagtaagtgaggagtaatattttcaatagaatattatgtaaattgtcc |
100 |
Q |
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| T |
23173231 |
tgataagctattttaataaaaataacaaagtcgttaactattctcacaaggacagtaagtgaggagtaatattttcaatagaatattatgtaaattgtcc |
23173132 |
T |
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| Q |
101 |
gagtgcgattagactagttgtttacttgtgcaaaggaatctgcataacaggca--tgtaaactgtcctcttcaccgtcctttttgtgagcacgcctgtga |
198 |
Q |
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| T |
23173131 |
gagtgcgattaggctagttgtttacctgtgcaaagaaatctgcataacaggcatgtgtaaactgtcctcttcaccgtcctttttgtgagcacgcctgtga |
23173032 |
T |
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| Q |
199 |
gaatcagtgacatttgttttttggttgtaatc |
230 |
Q |
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| T |
23173031 |
gaatcagtgacatttgttttttggttgtaatc |
23173000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 52614451 - 52614680
Alignment:
| Q |
1 |
tgataagctattttaataaaaataacaaagtcgttaactattctcacaaggacagtaagtgaggagtaatattttcaatagaatattatgtaaattgtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52614451 |
tgataagctattttaataaaaataacaaagtcgttaactattctcacaaggacagtaagtgaggagtaatattttcaatagaatattatgtaaattgtcc |
52614550 |
T |
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| Q |
101 |
gagtgcgattagactagttgtttacttgtgcaaaggaatctgcataacaggcatgtaaactgtcctcttcaccgtcctttttgtgagcacgcctgtgaga |
200 |
Q |
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| T |
52614551 |
gagtgcgattaggctagttgtttacctgtgcaaaggaatctgcgtaacaggcatgcaaactgtcctcttcaccgtcctttttgtgagcacgcctgtgaga |
52614650 |
T |
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| Q |
201 |
atcagtgacatttgttttttggttgtaatc |
230 |
Q |
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| T |
52614651 |
atcagtggcatttgttttttggttgcaatc |
52614680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 28304376 - 28304417
Alignment:
| Q |
40 |
attctcacaaggacagtaagtgaggagtaatattttcaataga |
82 |
Q |
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| T |
28304376 |
attctcacaaggacagtaagtg-ggagtaatatttttaataga |
28304417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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