View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_35 (Length: 242)
Name: NF3594_low_35
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 2600649 - 2600863
Alignment:
| Q |
19 |
acctcgaccgacgtttaccgggctttgatcgttgaccctttttcccaaaaggactacagaatccacacgcagagacctttggagacggtggttcgatcgc |
118 |
Q |
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| T |
2600649 |
acctcgaccgacgtttaccgggctttgatcgttgaccctttttcccaaaaggactacagaatccacacgcggagacctttggagacggtggttcgatcgc |
2600748 |
T |
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| Q |
119 |
tggtgaaacttttccggtacggtatcctcgtccagcaccggtggagcggcttctttgtacggtggttttcacatgaagctctttggaattattagtagta |
218 |
Q |
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| T |
2600749 |
tggtgaaacttttccggtacggtatcctcttccagcaccggtggaatggcttctttgtacggtggttttcacacgaagctctttggaattattagtagta |
2600848 |
T |
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| Q |
219 |
ttatcttcttcttct |
233 |
Q |
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||||||||||||||| |
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| T |
2600849 |
ttatcttcttcttct |
2600863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 44510605 - 44510489
Alignment:
| Q |
59 |
tttcccaaaaggactacagaatccacacgcagagacctttggagacggtggttcgatcgctggtgaaacttttccggtacggtatcctcgtccagcaccg |
158 |
Q |
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||||||||||| || ||| || ||||| ||||| | | | ||||||||||| || ||||| || |||||||||||||||||||| || ||||| ||||| |
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| T |
44510605 |
tttcccaaaagcaccacaaaacccacaagcagaaatcctaggagacggtggctcaatcgccggagaaacttttccggtacggtaaccacgtcctccaccg |
44510506 |
T |
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| Q |
159 |
gtggagcggcttctttg |
175 |
Q |
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|||| || |||||||| |
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| T |
44510505 |
ttggaacgacttctttg |
44510489 |
T |
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