View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_36 (Length: 236)
Name: NF3594_low_36
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2528991 - 2528774
Alignment:
| Q |
1 |
cttttcagcaaacttttcaattgagtccttaaaaaataaaacttttcaatttagtagtcggtcaggcaaacacttattttcttacccttttgtannnnnn |
100 |
Q |
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| T |
2528991 |
cttttcagcaaacttttcaattgagtccttaaaaaataaaacttttcaatttagtagtcggtcaggcaaacacttattttcttacccttttgtatttttt |
2528892 |
T |
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| Q |
101 |
nnnnnnnnnacaaattcttacctctgctataaagtatagcattgactgtattgatgaacgaaaaatatttttccatagtcaagacttatatttttcaact |
200 |
Q |
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| T |
2528891 |
tttttt---acaaattcttacctctgctataaagtatagcattgattgtattgatgaacgaaaaatatttttccatagtcaagacttatatttttcaact |
2528795 |
T |
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| Q |
201 |
gtatggatgaaagaaaaatat |
221 |
Q |
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|||| |||||||||||||||| |
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| T |
2528794 |
gtattgatgaaagaaaaatat |
2528774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 2538553 - 2538421
Alignment:
| Q |
39 |
aaacttttcaatttagtagtcggtcaggcaaacacttattttcttacccttttgtannnnnnnnnnnnnnnacaaattcttacctctgctataaagtata |
138 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| |
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| T |
2538553 |
aaacttttcaatttagtagtcggtcagacaaacacttattttcttaccctttt-ta------ttttattttacaaattcttacctctggaataaagtata |
2538461 |
T |
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| Q |
139 |
gcattgactgtattgatgaacgaaaaatatttttccatag |
178 |
Q |
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| T |
2538460 |
gtattgactgtattgatgaatgaaaaatatcttttcatag |
2538421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 2528797 - 2528746
Alignment:
| Q |
145 |
actgtattgatgaacgaaaaatatttttccatagtcaagacttatatttttcaac |
199 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
2528797 |
actgtattgatgaaagaaaaatatttttcca---tcaagacttatatttttcaac |
2528746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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