View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_41 (Length: 207)
Name: NF3594_low_41
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 11820125 - 11820286
Alignment:
| Q |
19 |
aatatgcatttgtcttgattcatccaattcatcaatttccatgaagttaaaggagaat--ttatgcgaactaattcgcaaaagtaccacaaactagtatg |
116 |
Q |
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| T |
11820125 |
aatatgcacttgtcttgattcgtccgattcatcaatttccatgaagttaaaggggaatatttatgccaactaattcacaaaagtaccacaaaccagtacg |
11820224 |
T |
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| Q |
117 |
caagtaccaatttgcggttcacaacaatgttaagaaaatattgtgactatgatctaaatgtg |
178 |
Q |
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| T |
11820225 |
caaataccaatttgcggttcacaacaatgttaagaaaattatgtgattatgatctaaatgtg |
11820286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 23407318 - 23407383
Alignment:
| Q |
70 |
ggagaatttatgcgaactaattcgcaaaagtaccacaaactagtatgcaagtaccaatttgcggtt |
135 |
Q |
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| T |
23407318 |
ggagaatatgtgtgaacaaattcgcaaaagtaccacaaaccagaacgcaagtagcaatctgcggtt |
23407383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 29849053 - 29849122
Alignment:
| Q |
73 |
gaatttatgcgaactaattcgcaaaagtaccacaaactagtatgcaagtaccaatttgcggttcacaaca |
142 |
Q |
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| T |
29849053 |
gaatttgtgcgaaccaattcgcaaaagtaccacgaactggtacgcaagtaccaattcgcagttcgcaaca |
29849122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 43725064 - 43725144
Alignment:
| Q |
90 |
ttcgcaaaagtaccacaaactagtatgcaagtaccaatttgcggttcacaacaatgttaagaaaatattgtgactatgatc |
170 |
Q |
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| T |
43725064 |
ttcgcgaaagtaccacaaactggtacgcaagtaacaatttgagattcgcaacattattaagagaattatgtgactatgatc |
43725144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 8638256 - 8638316
Alignment:
| Q |
82 |
cgaactaattcgcaaaagtaccacaaactagtatgcaagtaccaatttgcggttcacaaca |
142 |
Q |
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| T |
8638256 |
cgaaccaattcacaaaagtaccacaaacctatacgcaagtaccaatttgcggttcacaaca |
8638316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 14202637 - 14202682
Alignment:
| Q |
89 |
attcgcaaaagtaccacaaactagtatgcaagtaccaatttgcggt |
134 |
Q |
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| T |
14202637 |
attcgtaaaagtaccatgaactagtatgtaagtaccaatttgcggt |
14202682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 16723938 - 16723839
Alignment:
| Q |
28 |
ttgtcttgattcatccaattcatcaatttccatgaagttaaaggagaatttatgcgaactaattcgcaaaagtaccacaaactagtatgcaagtaccaat |
127 |
Q |
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| T |
16723938 |
ttgtctcgatttatccagtttgtcaatttccatga-gttacaggggaatttgtgcgaaccaattcacaaaagtaccacgaaccggtacacaagtaccaat |
16723840 |
T |
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