View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_5 (Length: 524)
Name: NF3594_low_5
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 2446763 - 2447260
Alignment:
| Q |
1 |
cacaccgacaaatgatacacaaggatttggttcctatgcaaatttattgaatctttagattttcacgatttcataatttgtacttatataccatgtgtct |
100 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446763 |
cacaccgacaaatgatatacaaggatttggttcctatgcaaatttattgaatctttagattttcacgatttcataatttgtacttatataccatgtgtct |
2446862 |
T |
|
| Q |
101 |
gcgtgtgtgtgnnnnnnnacaagaacttaattttatagtagtttaatttaatccttgattgtgtaagtaacacaatttatcatggaattaaggaaattta |
200 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446863 |
gcgtgtgtgt-tttttttacaagaacttaattttatagtagtttaatttaatccttgattgtgtaagtaacacaatttatcatggaattaaggaaattta |
2446961 |
T |
|
| Q |
201 |
attggagtcttatggtatgacaaatatgtttcttaatttaatcattgattgaatctgaatggggttagtttattgatatataacttggcataagatgact |
300 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446962 |
attggagtcttatggtatgacaaatatgtttcataatttaatcattgattgaatctgaatggggttagtttattgatatataacttggcataagatgact |
2447061 |
T |
|
| Q |
301 |
gatcaactcaagtatgatttctgctggaaagcttggactttgcttttgtcggatatatatggctcagtttactgaatagcgggccaggtggctcgagcga |
400 |
Q |
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|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2447062 |
gatcaactcaagtatgatttatgctggaaagcttggagtttgcttttgtcggatatatatggctcagtttactgaatagcgggccaggtggctcgagcga |
2447161 |
T |
|
| Q |
401 |
ggagagtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaagctccaaagaactgacacatgtgattacatttaattgtcattt |
499 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2447162 |
ggagagtatttaaacataagttgtactttgtaaaccttaagcttgattaatagaaagctccaaagaactgacacatgtgattacatttaattgtcattt |
2447260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 499
Target Start/End: Original strand, 24764831 - 24764861
Alignment:
| Q |
469 |
tgacacatgtgattacatttaattgtcattt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
24764831 |
tgacacatgtgattacatttaattgtcattt |
24764861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 499
Target Start/End: Original strand, 34778390 - 34778422
Alignment:
| Q |
467 |
actgacacatgtgattacatttaattgtcattt |
499 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
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|
| T |
34778390 |
actgacacatgtgattacacttaattgtcattt |
34778422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 24547089 - 24547037
Alignment:
| Q |
405 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaag |
457 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||||||| |||||||| |
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|
| T |
24547089 |
agtatttaaacacaagttgtactttataaaccctaagcttgattaatagaaag |
24547037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 455
Target Start/End: Complemental strand, 34372514 - 34372464
Alignment:
| Q |
405 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaa |
455 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||||||||| | |||||| |
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|
| T |
34372514 |
agtatttaaatacaagttgtactttgtaaaccctaagcttgaataatagaa |
34372464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 13855076 - 13855024
Alignment:
| Q |
405 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaag |
457 |
Q |
| |
|
||||||||||||||||||||| | |||| || ||||||||||| |||||||| |
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|
| T |
13855076 |
agtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaag |
13855024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 457
Target Start/End: Original strand, 38779463 - 38779515
Alignment:
| Q |
405 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaag |
457 |
Q |
| |
|
|||||||||||| |||||||||| || ||||| ||||||||| | |||||||| |
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|
| T |
38779463 |
agtatttaaacacaagttgtactatgcaaaccctaagcttgagtaatagaaag |
38779515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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