View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3594_low_7 (Length: 464)

Name: NF3594_low_7
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3594_low_7
NF3594_low_7
[»] chr2 (2 HSPs)
chr2 (132-451)||(42206045-42206364)
chr2 (1-113)||(42205901-42206013)
[»] chr6 (3 HSPs)
chr6 (157-324)||(13587578-13587745)
chr6 (204-249)||(6372991-6373036)
chr6 (181-273)||(27598164-27598256)
[»] chr4 (4 HSPs)
chr4 (158-330)||(21001329-21001500)
chr4 (237-332)||(18910003-18910098)
chr4 (158-330)||(51079052-51079224)
chr4 (290-333)||(39992134-39992177)
[»] chr7 (5 HSPs)
chr7 (175-335)||(8227474-8227634)
chr7 (243-331)||(8235063-8235151)
chr7 (234-330)||(23681833-23681929)
chr7 (255-332)||(2685939-2686016)
chr7 (234-319)||(47873004-47873089)
[»] chr3 (4 HSPs)
chr3 (162-317)||(40285362-40285517)
chr3 (234-328)||(13774416-13774510)
chr3 (297-331)||(36418200-36418234)
chr3 (253-330)||(45466467-45466544)
[»] chr8 (1 HSPs)
chr8 (154-329)||(29264535-29264710)
[»] chr5 (5 HSPs)
chr5 (181-250)||(8939838-8939907)
chr5 (293-330)||(6061452-6061489)
chr5 (293-330)||(6058546-6058583)
chr5 (234-331)||(8073671-8073768)
chr5 (154-210)||(8073600-8073656)
[»] chr1 (1 HSPs)
chr1 (154-273)||(41625469-41625588)


Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 132 - 451
Target Start/End: Original strand, 42206045 - 42206364
Alignment:
Q  132 ttattataatctataacacagacaagtctatggtgcacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcac 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206045 ttattataatctataacacagacaagtctatggtgcacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcac 42206144  T
Q  232 cgttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaa 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206145 cgttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaa 42206244  T
Q  332 ccatataacccttatttagattttgggtataatagttatattttgttaactttgaaggtttagttcctctgatgagtgatagtacgttctgctcctccaa 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206245 ccatataacccttatttagattttgggtataatagttatattttgttaactttgaaggtttagttcctctgatgagtgatagtacgttctgctcctccaa 42206344  T
Q  432 ttggtaaccaatgatattct 451  Q
    ||||||||||||||||||||    
T  42206345 ttggtaaccaatgatattct 42206364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 42205901 - 42206013
Alignment:
Q  1 tcaatgtcgtgtccggtgtctgtgtttgagtcttcctactgttctacaatttgactttctcatcattgacatagctgacgttttattttccgtttgtgtg 100  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42205901 tcaatgtcgtgtccggtgtctgtgtttgagtcttcgtactattctacaatttgactttctcatcattgacatagctgacgttttattttccatttgtgtg 42206000  T
Q  101 agttatttgtcat 113  Q
    |||||||||||||    
T  42206001 agttatttgtcat 42206013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 324
Target Start/End: Original strand, 13587578 - 13587745
Alignment:
Q  157 gtctatggtgcacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaaga 256  Q
    |||||| |||| |||  ||||||| |||||||||||||| |||||| ||||||||| | ||||||||| || |||  ||||||| ||||||||| || ||    
T  13587578 gtctattgtgcccaagggacatatatcttgcaccatgcataaggttgtttctaccattggatcaataaatctcactattaaattgaatgaaatatgacga 13587677  T
Q  257 gatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatatta 324  Q
    |||||||||||  ||||||  |||| || |||| |||| |||||||||||||||||||| ||||||||    
T  13587678 gatttaatgattcaatgctagaaaataagtttgcgcatagtacaatactaatttgtttgcgcatatta 13587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 6372991 - 6373036
Alignment:
Q  204 tttctaccaatagatcaataagtcgcaccgttaaattaaatgaaat 249  Q
    ||||||||| | |||||||||||| | |||||||||||||||||||    
T  6372991 tttctaccattggatcaataagtctcgccgttaaattaaatgaaat 6373036  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 27598164 - 27598256
Alignment:
Q  181 gtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatgatctaatg 273  Q
    |||||||||||||||||| ||  ||| ||||| | |||||||||| | ||   ||||||||||||||||| |  |||||||| ||||| ||||    
T  27598164 gtcttgcaccatgcacaacgtggtttttaccattggatcaataaggctcagtattaaattaaatgaaatatggtgagatttattgatccaatg 27598256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 21001500 - 21001329
Alignment:
Q  158 tctatggtgcacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagag 257  Q
    |||| |||||||||  ||||||||||||||||||| ||||||||| ||| ||||||| |||||| |||||   |  |||||||||||| |||| || |||    
T  21001500 tctacggtgcacaagggacatatgtcttgcaccattcacaaggttgtttttaccaatggatcaacaagtcag-ctattaaattaaatgtaatatgatgag 21001402  T
Q  258 atttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaa 330  Q
    ||||||||||| || | || |||||||  ||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  21001401 atttaatgatccaacggtggaaaacaagcttgtgcatggtgcaatactaatttgcttgcgcacattagacaaa 21001329  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 332
Target Start/End: Original strand, 18910003 - 18910098
Alignment:
Q  237 aattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaac 332  Q
    ||||||||||||||| | |||||||||||||  |||| | ||||| || |||||| ||| ||||| ||||| ||||||||| ||||||||||||||    
T  18910003 aattaaatgaaatacaatgagatttaatgattaaatggtaaaaaataagtttgtgtatgatacaagactaacttgtttgtgtatattagacaaaac 18910098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 330
Target Start/End: Original strand, 51079052 - 51079224
Alignment:
Q  158 tctatggtgcacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagag 257  Q
    ||||||||||||||   | ||| |||||||||||||||||||||| |||| || | | ||||||||| |  |||  |||| || ||| ||||| || |||    
T  51079052 tctatggtgcacaagcaagataagtcttgcaccatgcacaaggttgtttccactattggatcaataaattccactattaagtttaataaaataggatgag 51079151  T
Q  258 atttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaa 330  Q
    ||||| |||||   || |  |||||| | || |||||||| ||| | |||||||||||||||| | |||||||    
T  51079152 atttattgatcctgtggtagaaaacagacttttgcatggtgcaagagtaatttgtttgtgcatgtaagacaaa 51079224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 39992134 - 39992177
Alignment:
Q  290 tgcatggtacaatactaatttgtttgtgcatattagacaaaacc 333  Q
    |||||||| |||||||||||| |||||| |||||||||||||||    
T  39992134 tgcatggtgcaatactaatttatttgtgtatattagacaaaacc 39992177  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 335
Target Start/End: Original strand, 8227474 - 8227634
Alignment:
Q  175 acatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagatttaatgatctaatgc 274  Q
    ||||||| ||||||||||  |||| ||| |||| | || | ||||||||| || ||   || |||||||||||||| || ||||||||| |||  ||||     
T  8227474 acatatgccttgcaccatatacaaagttatttcaatcatttgatcaataaatctcattatttaattaaatgaaatatgatgagatttaacgatacaatgg 8227573  T
Q  275 tgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaaccat 335  Q
    || |||| || ||||||| |||||||| |||||||||  |||||| |||||||||||||||    
T  8227574 tggaaaataagtttgtgcgtggtacaaaactaatttgcgtgtgcacattagacaaaaccat 8227634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 331
Target Start/End: Original strand, 8235063 - 8235151
Alignment:
Q  243 atgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaa 331  Q
    |||||||| || || |||||||||||||||| ||||||| || |||||| |||||||||| |||||||| || || | |||||||||||    
T  8235063 atgaaatatgatgaaatttaatgatctaatggtgaaaaataagtttgtgtatggtacaattctaatttgcttttgtacattagacaaaa 8235151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 23681833 - 23681929
Alignment:
Q  234 ttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaa 330  Q
    |||||| |||||||||| || || ||||||||||| |||  ||||||| ||||||||| ||||| |||||  ||||| |||||||| ||||||||||    
T  23681833 ttaaatcaaatgaaatatgatgacatttaatgatcaaatagtgaaaaataaatttgtgtatggtgcaataaaaatttatttgtgcacattagacaaa 23681929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 2686016 - 2685939
Alignment:
Q  255 gagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaac 332  Q
    ||||||||||||||| ||| |||||||||||||| |  ||| | |||||||||||||||||||||  ||| |||||||    
T  2686016 gagatttaatgatctgatggtgaaaaacaaatttatagatgattcaatactaatttgtttgtgcacgttaaacaaaac 2685939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 47873004 - 47873089
Alignment:
Q  234 ttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgca 319  Q
    ||||||||||||||||| || |||||||||||||  ||   || |||| || ||||||| |||| |||||| ||||||||||||||    
T  47873004 ttaaattaaatgaaatatgatgagatttaatgatacaacagtggaaaataagtttgtgcttggtgcaataccaatttgtttgtgca 47873089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 162 - 317
Target Start/End: Complemental strand, 40285517 - 40285362
Alignment:
Q  162 tggtgcacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacgaagagattt 261  Q
    |||| ||||| ||||||||| |||||||||||||||| ||| ||| ||| | | |||||||||||| |||  ||||||| ||| |||||  | |||||||    
T  40285517 tggtacacaagagacatatgacttgcaccatgcacaaagttgtttatacaatttgatcaataagtctcactattaaattgaataaaatataacgagattt 40285418  T
Q  262 aatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtg 317  Q
    |||||||||||  || |||| ||| ||||  ||||| || ||||| |||| |||||    
T  40285417 aatgatctaattttggaaaataaacttgtatatggtgcagtactattttgcttgtg 40285362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 328
Target Start/End: Complemental strand, 13774510 - 13774416
Alignment:
Q  234 ttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagaca 328  Q
    ||||||||||||||||| |  |||||| ||| ||| |||  || |||| ||  |||||| |||| ||||| ||||||||||||||| ||||||||    
T  13774510 ttaaattaaatgaaatatggtgagattaaattatccaatagtggaaaataagcttgtgcgtggtgcaataataatttgtttgtgcaaattagaca 13774416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 36418200 - 36418234
Alignment:
Q  297 tacaatactaatttgtttgtgcatattagacaaaa 331  Q
    |||||||||||||| ||||||||||||||||||||    
T  36418200 tacaatactaatttttttgtgcatattagacaaaa 36418234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 330
Target Start/End: Complemental strand, 45466544 - 45466467
Alignment:
Q  253 aagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaa 330  Q
    ||||||| |||||||| |||| | ||||  ||  || |||||| | |||||||||||||||||||| |||||||||||    
T  45466544 aagagatataatgatccaatgataaaaattaagcttctgcatgttgcaatactaatttgtttgtgcgtattagacaaa 45466467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 329
Target Start/End: Original strand, 29264535 - 29264710
Alignment:
Q  154 caagtctatggtgcacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacga 253  Q
    |||||||||||||||||   ||| || |||||||||||||||||| ||  ||| ||||| | |||||||||| | ||   ||||||||||| ||||| |     
T  29264535 caagtctatggtgcacacgggacttacgtcttgcaccatgcacaatgtggtttttaccactggatcaataaggctcaatattaaattaaattaaatatgg 29264634  T
Q  254 agagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaa 329  Q
     |||||||| ||||| |||| ||  ||| ||| ||||||| |   |||||||| |||| ||||||| |||||||||    
T  29264635 tgagatttattgatccaatggtggcaaataaacttgtgcacgaagcaatactattttgcttgtgcacattagacaa 29264710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 8939838 - 8939907
Alignment:
Q  181 gtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaata 250  Q
    |||||||||||||||||| ||| |||| |||| | |||||||||||  |||||||||||||| |||||||    
T  8939838 gtcttgcaccatgcacaaagttgtttccaccattggatcaataagtttcaccgttaaattaattgaaata 8939907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 6061489 - 6061452
Alignment:
Q  293 atggtacaatactaatttgtttgtgcatattagacaaa 330  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  6061489 atggtgcaatactaatttgtttgtgcatattagacaaa 6061452  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 6058583 - 6058546
Alignment:
Q  293 atggtacaatactaatttgtttgtgcatattagacaaa 330  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  6058583 atggtgcaatcctaatttgtttgtgcatattagacaaa 6058546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 8073671 - 8073768
Alignment:
Q  234 ttaaattaaatgaaatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaa 331  Q
    ||||||||||||||||| || |||||||||||||  |||  |  |||| ||| |||||||||||  ||||||| |||| |||| ||  ||||||||||    
T  8073671 ttaaattaaatgaaatatgatgagatttaatgattcaatagttgaaaataaacttgtgcatggtgtaatactattttgcttgtacacgttagacaaaa 8073768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 8073600 - 8073656
Alignment:
Q  154 caagtctatggtgcacaaaagacatatgtcttgcaccatgcacaaggttttttctac 210  Q
    ||||||||||||||||||| |  ||||||||||||  ||||| |||||| |||||||    
T  8073600 caagtctatggtgcacaaagggaatatgtcttgcattatgcataaggttgtttctac 8073656  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 41625469 - 41625588
Alignment:
Q  154 caagtctatggtgcacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaatacga 253  Q
    |||||||||||||||||    | ||| ||||||||||||||||||| || |||| |||| ||||||||||| |  |||  ||||||||||| ||||| ||    
T  41625469 caagtctatggtgcacatgcaagataagtcttgcaccatgcacaagattctttccaccattagatcaataaatttcactattaaattaaataaaatatga 41625568  T
Q  254 agagatttaatgatctaatg 273  Q
     |||||| | ||||| ||||    
T  41625569 tgagattcattgatccaatg 41625588  T

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