View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3594_low_9 (Length: 422)
Name: NF3594_low_9
Description: NF3594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3594_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 241 - 387
Target Start/End: Original strand, 40105018 - 40105164
Alignment:
| Q |
241 |
agaggcataagatgagttgccgacgtgcttacttgtcccaataaaataataaattataataaatgagatcaaattccaggacccactttgatgtaataat |
340 |
Q |
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| T |
40105018 |
agaggcataagatgagttgccgacgtgcttacttgtcccaataaaataataaattataataaatgagatcaaattccaggacccactttgatgtaataat |
40105117 |
T |
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| Q |
341 |
tagcatcaaaatcaagataatctcacttcttaacacagtttcttcat |
387 |
Q |
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| T |
40105118 |
tagcatcaaaatcaagataatctcacttcttaacacagtttcttcat |
40105164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 40104884 - 40105033
Alignment:
| Q |
72 |
caataatccatctaacatgaatcatgaatgtcactttcaagacgaaaagtaaatgagcatatcttactcaagagtatgnnnnnnnnnnnnnnnnntaagt |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40104884 |
caataatccatctaacatgaatcatgaatgtcactttcaagacgaaaagtaaatgagcatatcttactcaagagtatgaaaaaataaataaaaaataagt |
40104983 |
T |
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| Q |
172 |
gaacattgtttaatcaagcgtccacgtgaatgatagaggcataagatgag |
221 |
Q |
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| T |
40104984 |
gaacattgtttaatcaagcgtccacgtgaatggtagaggcataagatgag |
40105033 |
T |
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