View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3595_high_3 (Length: 336)
Name: NF3595_high_3
Description: NF3595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3595_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 31704547 - 31704866
Alignment:
| Q |
17 |
caccaactccaaagtaaggtactccaccttcatgctcacaagcaagccatcgacctcatttgtagtgcgaacaaggccggtgtaaacaagagtctcacct |
116 |
Q |
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| T |
31704547 |
caccaactcgaaagtaaggtactccaccttcgtgctcacaagcaagccatcgacctcatttgtagtgcgaacaaggccggtgtaaaccagagtctcacct |
31704646 |
T |
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| Q |
117 |
ttcagctcccaaattgccttacactgaccatcctcaagaaactctatcttgctgtggctaataggaccttctggcaacatctgtagcaaacatcaaacat |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31704647 |
ttcagctctcaaattgccttacactgaccatcctcaagaaactctatcttgctgtggctaataggaccttctggcaacatctgcagcaaacatcaaacat |
31704746 |
T |
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| Q |
217 |
ttatacgcacacaaaatttccatgtaattcagaataggagacaaaaatatcctatacataaacttcataagattcacacaacacatgtataagtttgtct |
316 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31704747 |
ttatacgtacacaaattttccatgtaattcagaataggagacaaaaatatcttatacataaacttcataagattcacacaacacatgtataagtttgtct |
31704846 |
T |
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| Q |
317 |
tttgacctacacgatcattc |
336 |
Q |
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|||||||||||||||||||| |
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| T |
31704847 |
tttgacctacacgatcattc |
31704866 |
T |
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