View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3595_high_5 (Length: 253)
Name: NF3595_high_5
Description: NF3595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3595_high_5 |
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| [»] scaffold0595 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8343423 - 8343191
Alignment:
| Q |
1 |
tgtgaatgtcacgatgtctgatctctatccaacggctaagttagtctaattgcaatgactataagaaattacgagcgcaaaaagtccaagtcaaagaata |
100 |
Q |
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| T |
8343423 |
tgtgaatgtcacgatgtctgatctctatccaacggttaaattagtctaactgcaacgactataagaaattacgaccgtaaaaagtccaag------aata |
8343330 |
T |
|
| Q |
101 |
attagtgttattgattaggttatataccttagagagtaaggatcttgcagcaacttgtccaagtatagatttcatttggctcaaatatgcaacaggactc |
200 |
Q |
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| T |
8343329 |
attagtgctattgattaggttatataccttagagagtaaggatcttgcagcaatttgtccaagtatagatttcatttggctcaaatatgcaacaggactc |
8343230 |
T |
|
| Q |
201 |
aacaatgcgactgatttaacctgattttcccatttacct |
239 |
Q |
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| T |
8343229 |
aacaatgctactgatttaacctgattttcccatttacct |
8343191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 8339003 - 8338767
Alignment:
| Q |
8 |
gtcacgatgtctgatctctatccaacggctaagttagtctaattgcaatgactataagaaattacgagcgcaaaaagtccaagtcaaagaataa------ |
101 |
Q |
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| T |
8339003 |
gtcactatgtctgatctctatctaacgactaagatagtctgactacaacaacggtaataaattacgaccgcaaggaatccaagtccaagaataagaagag |
8338904 |
T |
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| Q |
102 |
ttagtgttattgattaggttatataccttagagagtaaggatcttgcagcaacttgtccaagtatagatttcatttggctcaaatatgcaacaggactca |
201 |
Q |
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| T |
8338903 |
ttagtgttatttattaggttatatacctcagatagtaaggatcttgcagcaacttgtccaagtatagttctcatttggcttaaatatgcaataggactca |
8338804 |
T |
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| Q |
202 |
acaatgcgactgatttaacctgattttcccatttacc |
238 |
Q |
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| T |
8338803 |
gcaatgctaccgatttaacctgatttacccatttacc |
8338767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 8331831 - 8331731
Alignment:
| Q |
135 |
agtaaggatcttgcagcaacttgtccaagtatagatttcatttggctcaaatatgcaacaggactcaacaatgcgactgatttaacctgattttcccatt |
234 |
Q |
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| T |
8331831 |
agtaaggatcttgcaccaacttgtccaagtacagttttcactttgctcaaatatgcaataggactcaacaatgctactgatttaacttgatttacccatt |
8331732 |
T |
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| Q |
235 |
t |
235 |
Q |
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| T |
8331731 |
t |
8331731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 7699 - 7485
Alignment:
| Q |
19 |
tgatctctatccaacggctaagttagtctaattgcaatgactataagaaattacgagcgcaaaaagtccaagtcaaagaataattagtgttattgattag |
118 |
Q |
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| T |
7699 |
tgatctctatccaacggttaagttagtctaactgcaacgactataagaaattaagaccgtaaaaagtccgag------aataattagtgctattgattag |
7606 |
T |
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| Q |
119 |
gttatataccttagagagtaaggatcttgcagcaacttgtccaagtatagatttcatttggctcaaatatgcaacaggactcaacaatgcgactgattta |
218 |
Q |
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| T |
7605 |
gttatataccttagagagtaaggatcttgcagcaatttgtccaagtatagatttcatttggctcaaatatgcaacaggactcaacaatgctactgattta |
7506 |
T |
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| Q |
219 |
acctgattttcccatttacct |
239 |
Q |
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| T |
7505 |
acctgattttcccatttacct |
7485 |
T |
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