View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3595_low_1 (Length: 561)
Name: NF3595_low_1
Description: NF3595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3595_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Original strand, 40062984 - 40063514
Alignment:
| Q |
19 |
ttgagttcataacctcatgagcactaacagaccaataaatcctctcaaccttgttccctggatgatgaatcacaactgttgccaattctgcagcttgaca |
118 |
Q |
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| T |
40062984 |
ttgagttcataacctcatgagcactaacagaccaataaatcctctcaaccttgttccctggacgatgaatcacaactgttgccaattctgcagcttgaca |
40063083 |
T |
|
| Q |
119 |
attccccatattctaacaatttcttgtagaagtgaagtgaagcgggtttgtgctgtgttgtaataataaataataaattgttgtgttgagttatgaaatg |
218 |
Q |
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| T |
40063084 |
attccccatattctaacaatttcttgtagaagtgaagtgaagtgggtttgtgctgtgttgtaataataaataataaattgttgtgttgagttatgaaatg |
40063183 |
T |
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| Q |
219 |
ggttgtgacgtttgaagtttgaaagatacgtagtatagagttattatgaagattaaggaaactgttttttctctgacaaggaaaaaatagatgtgataaa |
318 |
Q |
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| T |
40063184 |
ggttgtgacgtttgaagtttgaaagatacgtagtatagagttattatgaagattaaggaaactgttttttctctgacaaggaaaaaatagatgtgataaa |
40063283 |
T |
|
| Q |
319 |
aacgtgtataaggg-nnnnnnnttgatgatgatgatggagaaaagaaaagaaaacagagtactctgtttatttatggattaaaaataaatgaacatgacg |
417 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063284 |
aacgtgtataagggaaaaaaaattgatgatgatgatggagaatagaaaagaaaacagagtactctgtttatttatggattaaaaataaatgaacatgacg |
40063383 |
T |
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| Q |
418 |
tgacggtagctaggttttacttacatatatatacactgacgcacgcaatgaatcaatggatgtgaccaacactactgaagcgtaaatgagaaatactatt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063384 |
tgacggtagctaggttttacttacatatatatacactgacgcacgcaatgaatcaatggatgtgaccaacactactgaagcgtaaatgagaaatactatt |
40063483 |
T |
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| Q |
518 |
-actattaatgagaatggtgaaggatgatat |
547 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40063484 |
aactattaatgagaatggtgaaggatgatat |
40063514 |
T |
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