View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3595_low_2 (Length: 471)

Name: NF3595_low_2
Description: NF3595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3595_low_2
NF3595_low_2
[»] chr1 (7 HSPs)
chr1 (227-431)||(23473789-23473992)
chr1 (227-322)||(40961555-40961650)
chr1 (27-63)||(48742014-48742050)
chr1 (298-385)||(35306700-35306787)
chr1 (131-171)||(7013207-7013247)
chr1 (80-122)||(37920147-37920189)
chr1 (131-171)||(52689536-52689576)
[»] chr3 (6 HSPs)
chr3 (239-433)||(8925810-8926003)
chr3 (18-74)||(55480963-55481019)
chr3 (234-385)||(46651297-46651448)
chr3 (80-173)||(30478439-30478533)
chr3 (79-122)||(16280944-16280987)
chr3 (298-385)||(35231756-35231843)
[»] chr5 (7 HSPs)
chr5 (80-171)||(25994509-25994600)
chr5 (80-171)||(26092536-26092627)
chr5 (131-171)||(25994998-25995038)
chr5 (80-171)||(26093037-26093128)
chr5 (80-122)||(32804888-32804930)
chr5 (80-120)||(14410252-14410292)
chr5 (27-63)||(35110118-35110153)
[»] scaffold0027 (1 HSPs)
scaffold0027 (82-171)||(49184-49272)
[»] chr4 (3 HSPs)
chr4 (80-171)||(32303870-32303962)
chr4 (80-122)||(40361677-40361719)
chr4 (80-116)||(40277072-40277108)
[»] chr2 (6 HSPs)
chr2 (83-122)||(19004907-19004946)
chr2 (132-171)||(26129313-26129352)
chr2 (29-67)||(14413561-14413599)
chr2 (80-122)||(19004820-19004862)
chr2 (80-122)||(33710906-33710948)
chr2 (84-117)||(26424973-26425006)
[»] chr8 (3 HSPs)
chr8 (80-122)||(45156029-45156071)
chr8 (80-120)||(7130146-7130186)
chr8 (131-171)||(38077168-38077208)
[»] chr7 (2 HSPs)
chr7 (29-67)||(20188367-20188405)
chr7 (82-122)||(30859861-30859901)
[»] chr6 (2 HSPs)
chr6 (80-122)||(31778841-31778883)
chr6 (131-171)||(12488472-12488512)
[»] scaffold0015 (1 HSPs)
scaffold0015 (29-66)||(82692-82729)
[»] scaffold0007 (1 HSPs)
scaffold0007 (81-118)||(232390-232427)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 227 - 431
Target Start/End: Original strand, 23473789 - 23473992
Alignment:
Q  227 aaaattgaatgtagtggaattgaacatggtggaatccatttcatcatataccactatctccacttgctttccattccctccaatttgggaggtatagaat 326  Q
    ||||||||||| | |||||| ||||||| ||||||||||| ||||  ||||||  |||| | |||| ||| |||||||||||||||| |||||||| |||    
T  23473789 aaaattgaatggaatggaatggaacatgatggaatccattccatcccataccatcatctactcttgtttttcattccctccaatttgtgaggtatacaat 23473888  T
Q  327 gaaatggaacatcttaattaattaattactcttttatccctattttcttattccatcacattccatttctttttctccttcttcatgtatcgtgtcttgc 426  Q
    | ||||  ||| |||||||||||||||||| |||| ||||||||||| |||||||||||||  ||| |||| || |||| ||||||| || |||||||||    
T  23473889 ggaatgatacaacttaattaattaattact-ttttttccctattttcgtattccatcacatatcatgtcttcttgtcctccttcatgcattgtgtcttgc 23473987  T
Q  427 ttctc 431  Q
    |||||    
T  23473988 ttctc 23473992  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 322
Target Start/End: Original strand, 40961555 - 40961650
Alignment:
Q  227 aaaattgaatgtagtggaattgaacatggtggaatccatttcatcatataccactatctccacttgctttccattccctccaatttgggaggtata 322  Q
    |||||||||||||||| ||| ||| ||||||||||| ||| |||| |||||||  |||||| |||| ||| |||||||||||||||||||||||||    
T  40961555 aaaattgaatgtagtgaaatagaatatggtggaatctattccatcctataccatcatctcctcttgtttttcattccctccaatttgggaggtata 40961650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 48742050 - 48742014
Alignment:
Q  27 gattgaatgaaatcggaaggagagagagggaagaaga 63  Q
    |||||||||||||||||||||||||||||||||||||    
T  48742050 gattgaatgaaatcggaaggagagagagggaagaaga 48742014  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 385
Target Start/End: Complemental strand, 35306787 - 35306700
Alignment:
Q  298 cattccctccaatttgggaggtatagaatgaaatggaacatcttaattaattaattactcttttatccctattttcttattccatcac 385  Q
    ||||||| ||||||||||||||||  |||| ||||||||  |||||||   | |||||||||||||||||||||| ||| | ||||||    
T  35306787 cattccccccaatttgggaggtatgcaatggaatggaaccacttaattctattattactcttttatccctattttattacttcatcac 35306700  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 7013247 - 7013207
Alignment:
Q  131 gaaattttaggtcaagttaattttacacttgcgttagttaa 171  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  7013247 gaaattttaagtcatgttaattttacacttgcgttagttaa 7013207  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 37920147 - 37920189
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgt 122  Q
    |||||||||||||||||  ||||||||||| ||||||||||||    
T  37920147 gcgtgagttaactcacgttgcgtgatttaagtcacgcatgtgt 37920189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 52689576 - 52689536
Alignment:
Q  131 gaaattttaggtcaagttaattttacacttgcgttagttaa 171  Q
    ||||||||| |||| |||||||||| |||||||||||||||    
T  52689576 gaaattttaagtcatgttaattttatacttgcgttagttaa 52689536  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 433
Target Start/End: Original strand, 8925810 - 8926003
Alignment:
Q  239 agtggaattgaacatggtggaatccatttcatcatataccactatctccacttgctttccattccctccaatttgggaggtatagaatgaaatggaacat 338  Q
    |||||||| ||||||||||||||| ||| |||| ||||| |  |||||  |||  ||| ||||||  | ||| || |||||||| |||| |||| ||||     
T  8925810 agtggaatggaacatggtggaatctattccatcctatactatcatctcgtcttatttttcattcctcctaatctgcgaggtatacaatggaatgaaacaa 8925909  T
Q  339 cttaattaattaattactcttttatccctattttcttattccatcacattccatttctttttctccttcttcatgtatcgtgtcttgcttctcca 433  Q
    ||||||| || |||| || |||||||||||||||||| ||||||||||| | || || ||||||||| |||||||||| |||| || ||||||||    
T  8925910 cttaattgatgaattgcttttttatccctattttcttgttccatcacatacaatgtc-ttttctcctccttcatgtattgtgttttacttctcca 8926003  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 55480963 - 55481019
Alignment:
Q  18 gaagggatggattgaatgaaatcggaaggagagagagggaagaagataactaaactc 74  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55480963 gaagagatggattgaatgaaatcggaaggagagagagggaagaagataaccaaactc 55481019  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 46651297 - 46651448
Alignment:
Q  234 aatgtagtggaattgaacatggtggaatccatttcatcatataccactatctccacttgctttccattccctccaatttgggaggtatagaatgaaatgg 333  Q
    |||| |||||||| ||||||| ||| ||| ||||||||||||||||| |  ||  |||  ||| |||||| ||||||||| ||||||   |||||||||     
T  46651297 aatggagtggaatcgaacatgatgggatctatttcatcatataccaccacttcttcttatttttcattccatccaatttgagaggtaagcaatgaaatga 46651396  T
Q  334 aacatcttaattaattaattactcttttatccctattttcttattccatcac 385  Q
    |   |||||||||| |||||||  ||| ||||||||||| ||||| ||||||    
T  46651397 actttcttaattaaataattaccatttcatccctatttttttatttcatcac 46651448  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 30478533 - 30478439
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgt-nnnnnnntgaaattttaggtcaagttaattttacacttgcgttagttaatt 173  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||         ||||||||| |||| |||||||||| | |||||||||||||||    
T  30478533 gcgtgagttaactcatgcggcgttatttaagtcacgcatgtgtaaaattaacgaaattttaagtcatgttaattttatagttgcgttagttaatt 30478439  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 16280944 - 16280987
Alignment:
Q  79 ggcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgt 122  Q
    |||||||||||||||||||||||||| |||| ||||||| ||||    
T  16280944 ggcgtgagttaactcacgcggcgtgacttaagtcacgcaagtgt 16280987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 385
Target Start/End: Complemental strand, 35231843 - 35231756
Alignment:
Q  298 cattccctccaatttgggaggtatagaatgaaatggaacatcttaattaattaattactcttttatccctattttcttattccatcac 385  Q
    ||||||| ||||||||||||||||  |||| ||| ||||  |||||||   | |||||||||||||||||||||| ||| | ||||||    
T  35231843 cattccccccaatttgggaggtatgcaatggaatagaaccacttaattctattattactcttttatccctattttattacttcatcac 35231756  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 25994600 - 25994509
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgtnnnnnnntgaaattttaggtcaagttaattttacacttgcgttagttaa 171  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||       ||||| |||| |||| ||||||||||||||||| ||||||||    
T  25994600 gcgtgagttaactcaggcggcgtgacttaagtcacgcatgtgtaaaaaaatgaaactttatgtcatgttaattttacacttgcattagttaa 25994509  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 26092627 - 26092536
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgtnnnnnnntgaaattttaggtcaagttaattttacacttgcgttagttaa 171  Q
    ||||||||||||||| ||| | ||| |||| ||||||| ||||       |||||||||| |||| ||||||||||||||||||||||||||    
T  26092627 gcgtgagttaactcatgcgacatgacttaagtcacgcaagtgtaaaaaaatgaaattttaagtcatgttaattttacacttgcgttagttaa 26092536  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 25994998 - 25995038
Alignment:
Q  131 gaaattttaggtcaagttaattttacacttgcgttagttaa 171  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  25994998 gaaattttaagtcatgttaattttacacttgcgttagttaa 25995038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 26093037 - 26093128
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgtnnnnnnntgaaattttaggtcaagttaattttacacttgcgttagttaa 171  Q
    |||| |||||| |||  |||||||| |||| |||| |||||||       |||||||||| |||| |||||||||||||||||||| |||||    
T  26093037 gcgtaagttaattcatacggcgtgacttaagtcacacatgtgtaaaaaaatgaaattttaagtcatgttaattttacacttgcgttggttaa 26093128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 32804888 - 32804930
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgt 122  Q
    ||||||||||||||||||||||||| |||| |||| |||||||    
T  32804888 gcgtgagttaactcacgcggcgtgacttaagtcacacatgtgt 32804930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 14410292 - 14410252
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgt 120  Q
    |||||||||||||||||| |||||| |||| ||||||||||    
T  14410292 gcgtgagttaactcacgcagcgtgacttaagtcacgcatgt 14410252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 35110153 - 35110118
Alignment:
Q  27 gattgaatgaaatcggaaggagagagagggaagaaga 63  Q
    ||||||||||| |||||||||||||||||||||||||    
T  35110153 gattgaatgaa-tcggaaggagagagagggaagaaga 35110118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 49272 - 49184
Alignment:
Q  82 gtgagttaactcacgcggcgtgatttaaatcacgcatgtgtnnnnnnntgaaattttaggtcaagttaattttacacttgcgttagttaa 171  Q
    ||||||||||||| |||||||||||||| ||| ||||||||        ||||||||| |||| ||||||||||||||||||||| ||||    
T  49272 gtgagttaactcatgcggcgtgatttaagtcatgcatgtgtaaaaaac-gaaattttaagtcatgttaattttacacttgcgttaattaa 49184  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 32303962 - 32303870
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgtnnnnnnn-tgaaattttaggtcaagttaattttacacttgcgttagttaa 171  Q
    ||||||||||||||| ||| ||||| |||| ||||| ||||||        |||||||||| |||| ||||||||||||||||||||||||||    
T  32303962 gcgtgagttaactcatgcgacgtgacttaagtcacgtatgtgtaaaaaaaatgaaattttaagtcatgttaattttacacttgcgttagttaa 32303870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 40361677 - 40361719
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgt 122  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||    
T  40361677 gcgtgagttaactcacgtggcgtgacttaagtcacgcatgtgt 40361719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 40277072 - 40277108
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgc 116  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  40277072 gcgtgagttaactcacgcggcgtgacttaactcacgc 40277108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 19004907 - 19004946
Alignment:
Q  83 tgagttaactcacgcggcgtgatttaaatcacgcatgtgt 122  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  19004907 tgagttaactcatgcggcgtgatttaagtcacgcatgtgt 19004946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 26129313 - 26129352
Alignment:
Q  132 aaattttaggtcaagttaattttacacttgcgttagttaa 171  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  26129313 aaattttaagtcatgttaattttacacttgcgttagttaa 26129352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 14413599 - 14413561
Alignment:
Q  29 ttgaatgaaatcggaaggagagagagggaagaagataac 67  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  14413599 ttgaatgaaatcagaagaagagagagggaagaagataac 14413561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 19004862 - 19004820
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgt 122  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  19004862 gcgtgagttaactcatgcggcgtgacttaagtcacgcatgtgt 19004820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 33710948 - 33710906
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgt 122  Q
    |||||||||||||||||| |||||| |||| ||||||||||||    
T  33710948 gcgtgagttaactcacgcagcgtgacttaagtcacgcatgtgt 33710906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 26425006 - 26424973
Alignment:
Q  84 gagttaactcacgcggcgtgatttaaatcacgca 117  Q
    ||||||||||||||||||||| ||||||||||||    
T  26425006 gagttaactcacgcggcgtgacttaaatcacgca 26424973  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 45156071 - 45156029
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgt 122  Q
    ||||||||||||||| || ||||||||||| ||||||||||||    
T  45156071 gcgtgagttaactcatgcagcgtgatttaagtcacgcatgtgt 45156029  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 7130186 - 7130146
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgt 120  Q
    |||||||||||||||||| |||||| |||| ||||||||||    
T  7130186 gcgtgagttaactcacgcagcgtgacttaagtcacgcatgt 7130146  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 38077168 - 38077208
Alignment:
Q  131 gaaattttaggtcaagttaattttacacttgcgttagttaa 171  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  38077168 gaaattttaaatcatgttaattttacacttgcgttagttaa 38077208  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 20188405 - 20188367
Alignment:
Q  29 ttgaatgaaatcggaaggagagagagggaagaagataac 67  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  20188405 ttgaatgaaatcggaagaagggagagggaagaagataac 20188367  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 30859901 - 30859861
Alignment:
Q  82 gtgagttaactcacgcggcgtgatttaaatcacgcatgtgt 122  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  30859901 gtgagttaactcacgcggcgtgacttaagtcatgcatgtgt 30859861  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 31778883 - 31778841
Alignment:
Q  80 gcgtgagttaactcacgcggcgtgatttaaatcacgcatgtgt 122  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  31778883 gcgtgagttaactcatgcggcgtgacttaagtcacgcatgtgt 31778841  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 12488512 - 12488472
Alignment:
Q  131 gaaattttaggtcaagttaattttacacttgcgttagttaa 171  Q
    ||||||||| |||| ||||||||||||||| ||||||||||    
T  12488512 gaaattttaagtcatgttaattttacacttacgttagttaa 12488472  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 82692 - 82729
Alignment:
Q  29 ttgaatgaaatcggaaggagagagagggaagaagataa 66  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  82692 ttgaatgaaatcggaagaagagggagggaagaagataa 82729  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 232390 - 232427
Alignment:
Q  81 cgtgagttaactcacgcggcgtgatttaaatcacgcat 118  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  232390 cgtgagttaactcacgcggcgtgacttaagtcacgcat 232427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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