View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3595_low_4 (Length: 382)
Name: NF3595_low_4
Description: NF3595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3595_low_4 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 20492951 - 20493306
Alignment:
| Q |
18 |
atgtacttgtgacattgccttatttaattgatcaatgtttgttttcaagagaactagaagaaaggacattggctattgaggtaccaaggaatgagcaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20492951 |
atgtacttgtgacattgccttatttaattgatcaatgtttgttttcaagagaactagaagaaaggaaattggctattgaggtaccaaggaatgagcaaga |
20493050 |
T |
|
| Q |
118 |
tgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20493051 |
tgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctatagaaaaaatgccaaagatatgggaaag |
20493150 |
T |
|
| Q |
218 |
gttttcagttcaaaagatcttcacaatgaatacattaaaggtttcattgatgctctccaaaaacatagagttcattccaacaattaagcatatttatgtg |
317 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20493151 |
attttcggttcaaaagatcttcacaatgaatacattaaaggtttcattgatgctctccaaaaacatagagttcattccaacaattaagcatatttatgtg |
20493250 |
T |
|
| Q |
318 |
ttg-nnnnnnnnaccttattgcaacaataatccatgagatgttgatgtaagttcat |
372 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20493251 |
ttgtttttttttaccttattgcaacaataatccatgagatgttgatgtaagttcat |
20493306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 1355280 - 1355511
Alignment:
| Q |
18 |
atgtacttgtgacattgccttatttaattgatcaatgtttgttttcaagagaactagaagaaaggacattggctattgaggtaccaaggaatgagcaaga |
117 |
Q |
| |
|
|||| ||||||||| |||||||||| |||| || |||||||||||||| | | | | |||| | | ||||| |||| |||||||||| |||| |||| |
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|
| T |
1355280 |
atgttcttgtgacactgccttatttgcttgaccagtgtttgttttcaagggcattggtggaaaaggaagtggctgttgaagtaccaaggagtgaggaaga |
1355379 |
T |
|
| Q |
118 |
tgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaag |
217 |
Q |
| |
|
|||||| ||||||||||||||| | || | |||||||||||||||| ||||||||||||||||||| | ||||| ||||| ||||| |||| ||| |
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|
| T |
1355380 |
tgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgctaaagagttggggaag |
1355479 |
T |
|
| Q |
218 |
gttttcagttcaaaagatcttcacaatgaata |
249 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| |
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|
| T |
1355480 |
gttttcagttcaaaagatattcacaatcaata |
1355511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 1362166 - 1362397
Alignment:
| Q |
18 |
atgtacttgtgacattgccttatttaattgatcaatgtttgttttcaagagaactagaagaaaggacattggctattgaggtaccaaggaatgagcaaga |
117 |
Q |
| |
|
|||| ||||||||| |||||||||| |||| ||||||||||||||||| | | | | |||| | | ||||| ||||||||||||||| |||| |||| |
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|
| T |
1362166 |
atgttcttgtgacactgccttatttgcttgaccaatgtttgttttcaagggcattggtggaaaagggagtggctgttgaggtaccaaggagtgaggaaga |
1362265 |
T |
|
| Q |
118 |
tgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaag |
217 |
Q |
| |
|
|||||| ||||||||||||||| | || | |||||||||||||||| ||||||||||||||||||| | ||||| ||||| ||||| |||| || |
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|
| T |
1362266 |
tgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgctaaagagttggggaaa |
1362365 |
T |
|
| Q |
218 |
gttttcagttcaaaagatcttcacaatgaata |
249 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||| |
|
|
| T |
1362366 |
gttttcagttcaaaagatattcataatcaata |
1362397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 29954816 - 29955110
Alignment:
| Q |
18 |
atgtacttgtgacattgccttatttaattgatcaatgtttgttttcaagagaactagaagaaaggacattggctattgaggtaccaaggaatgagcaaga |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| || |||| |||||||||||||||| ||||||||| |
|
|
| T |
29954816 |
atgtccttgtgacattgccttatttacctgaccaatgtttgttttcaagagcactagaagaaaagaaggtggcaattgaggtaccaaggagtgagcaaga |
29954915 |
T |
|
| Q |
118 |
tgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaag |
217 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| |||| |
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|
| T |
29954916 |
tgggtcctttactagggactcgatagcccaaacattgaggttggcaatagtggatgaggaaggaagtatgtatcggaataatgccaaagatatggaaaag |
29955015 |
T |
|
| Q |
218 |
gttttcagttcaaaagatcttcacaatgaatacattaaaggtttcattgatgctctccaaaaacatagagttcattccaacaattaagcatattt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||| |||||| ||||| ||||||||| || ||||||||||||||| |
|
|
| T |
29955016 |
gttttcagttcaaaagatcttcacaatgaatacattaaagatgtcattgctgctcttcaaaagtatagagttcgttatgtcaattaagcatattt |
29955110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 51369637 - 51369343
Alignment:
| Q |
18 |
atgtacttgtgacattgccttatttaattgatcaatgtttgttttcaagagaactagaagaaaggacattggctattgaggtaccaaggaatgagcaaga |
117 |
Q |
| |
|
|||| ||||| |||||||||||| || |||| || ||||||| | ||||| ||||||||||| || | ||||| |||| |||||||||| ||||||||| |
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|
| T |
51369637 |
atgttcttgtcacattgccttatatacttgaccagtgtttgtatgcaagattactagaagaaaagaaagtggctgttgaagtaccaaggagtgagcaaga |
51369538 |
T |
|
| Q |
118 |
tgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaag |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || | | ||||||||||| |||||||||||||| |
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|
| T |
51369537 |
tgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtggatgaggaaggtagcacgtgcaggaaaaatgctaaagatatgggaaaa |
51369438 |
T |
|
| Q |
218 |
gttttcagttcaaaagatcttcacaatgaatacattaaaggtttcattgatgctctccaaaaacatagagttcattccaacaattaagcatattt |
312 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||| || | |||||| ||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
51369437 |
attttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcatagagttcattccgacagttaagcatattt |
51369343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 372
Target Start/End: Complemental strand, 51369304 - 51369263
Alignment:
| Q |
331 |
cttattgcaacaataatccatgagatgttgatgtaagttcat |
372 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
51369304 |
cttattgcaataatagtccatgagatgttgatgtcagttcat |
51369263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 306
Target Start/End: Original strand, 11532134 - 11532417
Alignment:
| Q |
23 |
cttgtgacattgccttatttaattgatcaatgtttgttttcaagagaactagaagaaaggacattggctattgaggtaccaaggaatgagcaagatgggt |
122 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| || | ||||||||||||||||||||| |||| |||| |||| |
|
|
| T |
11532134 |
cttgtgacattgccttatttaattgaccaatgtttgttctcaagagtactagaagaaaagaaagtggctattgaggtaccaaggagtgagaaagacgggt |
11532233 |
T |
|
| Q |
123 |
cctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaaggtttt |
222 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| || || || |||||||||||||||||||||||||| |
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|
| T |
11532234 |
cctttactagggactcagtagccaaaacattgaggttggtaataatggatgaggaaggaagtacgtacagaaacaatgccaaagatatgggaaaggtttt |
11532333 |
T |
|
| Q |
223 |
cagttcaaaagatcttcacaatgaatacattaaaggtttcattgatgctctccaaaaacatagagttcattccaacaattaagc |
306 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| ||| |||| |||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
11532334 |
cagttcaaaagatcttcacaatcaatacattgaagattttattgttgctcttcaaaagtatagagttcattccaatgattaagc |
11532417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 14589239 - 14589533
Alignment:
| Q |
18 |
atgtacttgtgacattgccttatttaattgatcaatgtttgttttcaagagaactagaagaaaggacattggctattgaggtaccaaggaatgagcaaga |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||||||| |||||| ||||||||||| || | ||||| ||||||||||||||| ||||| ||| |
|
|
| T |
14589239 |
atgttcttgtgacattgccttatttacttgaccaatgtttgtttgcaagagtactagaagaaaagaaagtggctgttgaggtaccaaggagtgagccaga |
14589338 |
T |
|
| Q |
118 |
tgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaag |
217 |
Q |
| |
|
|||| || ||| |||||||| | | || |||||||||||||||| |||||||||||||||||||||||| || ||||| ||||||||||| ||||||||| |
|
|
| T |
14589339 |
tggggccattaatagggactgtgttgctaaaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagaaatgggaaag |
14589438 |
T |
|
| Q |
218 |
gttttcagttcaaaagatcttcacaatgaatacattaaaggtttcattgatgctctccaaaaacatagagttcattccaacaattaagcatattt |
312 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
14589439 |
gttgtgagttcaaaagatcttcacaatgaatacattaaaaacttcattgccactcttcaaaagtttagagttcattccgacaattaagcatattt |
14589533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 14622897 - 14623191
Alignment:
| Q |
18 |
atgtacttgtgacattgccttatttaattgatcaatgtttgttttcaagagaactagaagaaaggacattggctattgaggtaccaaggaatgagcaaga |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||||||| |||||| ||||||||||| || | ||||| ||||||||||||||| ||||| ||| |
|
|
| T |
14622897 |
atgttcttgtgacattgccttatttacttgaccaatgtttgtttgcaagagtactagaagaaaagaaagtggctgttgaggtaccaaggagtgagccaga |
14622996 |
T |
|
| Q |
118 |
tgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaag |
217 |
Q |
| |
|
|||| || ||| |||||||| | | || |||||||||||||||| |||||||||||||||||||||||| || ||||| ||||||||||| ||||||||| |
|
|
| T |
14622997 |
tggggccattaatagggactgtgttgctaaaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagacatgggaaag |
14623096 |
T |
|
| Q |
218 |
gttttcagttcaaaagatcttcacaatgaatacattaaaggtttcattgatgctctccaaaaacatagagttcattccaacaattaagcatattt |
312 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||||||||| |||||||| ||||||| |
|
|
| T |
14623097 |
gttgtgagttcaaaagatcttcacaatgaatacattaaaaatttcattgccactcttcaaaagtttagagttcattccgacaattaaacatattt |
14623191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 12846794 - 12847070
Alignment:
| Q |
18 |
atgtacttgtgacattgccttatttaattgatcaatgtttgttttcaagagaactagaagaaaggacattggctattgaggtaccaaggaatgagcaaga |
117 |
Q |
| |
|
|||| ||||| |||||||||||||| | |||||||||||||||||||||||||||| |||| || | |||| |||||||| ||||| | |||| | || |
|
|
| T |
12846794 |
atgttcttgttacattgccttatttgctagatcaatgtttgttttcaagagaactagctgaaaagaaagtggccattgaggttccaagaagtgaggagga |
12846893 |
T |
|
| Q |
118 |
tgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaag |
217 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||||| |||||| |||||| ||||||| ||| || ||||| ||||| ||||| ||||| ||| |
|
|
| T |
12846894 |
tgggtcctttactagggactttgtagccctaacattgaggttagcaataatggatgccgaaggaattatttacaggaacaatgcaaaagagatgggcaag |
12846993 |
T |
|
| Q |
218 |
gttttcagttcaaaagatcttcacaatgaatacattaaaggtttcattgatgctctccaaaaacatagagttcattc |
294 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||| |||||||| |||||| ||||| |||| |||||||| |
|
|
| T |
12846994 |
attttcagttcaaaagaacttcacaaaaaatacattgaagatttcattgctgctcttcaaaagtatagggttcattc |
12847070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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