View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3595_low_9 (Length: 250)
Name: NF3595_low_9
Description: NF3595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3595_low_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 28216011 - 28216248
Alignment:
| Q |
11 |
cagagaatgatgtctttattgcgtgtggtcattccttggcaggtttactctgccaaagcagaatgctacatgattcctatttgaatatttatgttaggag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28216011 |
cagagaatgatgtctttattgcgtgtggtcattccttggcaggtttactctgccaaagcagaatgctacatgattcctatttgaatatttatgttaggag |
28216110 |
T |
|
| Q |
111 |
aattattgtaggctgagctgtagtgtgtacatttcggcatatgacttgcctgaatcactgttgttgctaggaattatggtttcagcaatgccattatatc |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28216111 |
aattgttgtaggctgagctgtagtgtgtacatttcggcatatgacttgcctgaatcactgttgttgctaggaattatggtttcagcaatgccattatatc |
28216210 |
T |
|
| Q |
211 |
tgttagagagtagacttaatgcatgtgttggtcttcactt |
250 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
28216211 |
tgtt--agagtagacttaatgcatgtgttggttttcactt |
28216248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University