View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3596_high_12 (Length: 211)

Name: NF3596_high_12
Description: NF3596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3596_high_12
NF3596_high_12
[»] chr4 (22 HSPs)
chr4 (1-157)||(23830440-23830596)
chr4 (158-211)||(47540135-47540188)
chr4 (155-211)||(34116558-34116614)
chr4 (158-208)||(50158995-50159045)
chr4 (158-211)||(23347775-23347828)
chr4 (158-211)||(25139973-25140026)
chr4 (154-211)||(31147227-31147284)
chr4 (151-211)||(4896518-4896578)
chr4 (155-211)||(40409184-40409240)
chr4 (158-201)||(39067978-39068021)
chr4 (158-197)||(44133544-44133583)
chr4 (157-211)||(46566928-46566982)
chr4 (161-211)||(48743713-48743763)
chr4 (158-211)||(169520-169573)
chr4 (153-202)||(38133975-38134024)
chr4 (158-211)||(44165909-44165962)
chr4 (158-211)||(46794519-46794572)
chr4 (158-211)||(52392243-52392296)
chr4 (155-211)||(3664778-3664834)
chr4 (156-204)||(12074176-12074224)
chr4 (155-211)||(19910809-19910865)
chr4 (156-208)||(35580124-35580176)
[»] chr5 (10 HSPs)
chr5 (157-211)||(20591492-20591546)
chr5 (156-211)||(39191852-39191907)
chr5 (158-211)||(12661965-12662018)
chr5 (157-211)||(9714154-9714208)
chr5 (158-211)||(34381012-34381065)
chr5 (157-210)||(38500942-38500995)
chr5 (158-211)||(39595272-39595325)
chr5 (155-211)||(19827392-19827448)
chr5 (155-211)||(24431636-24431692)
chr5 (155-211)||(27340866-27340922)
[»] chr1 (21 HSPs)
chr1 (157-211)||(24910152-24910206)
chr1 (158-211)||(24611844-24611897)
chr1 (159-211)||(1724250-1724301)
chr1 (159-211)||(12489599-12489651)
chr1 (157-211)||(38233272-38233326)
chr1 (156-210)||(46003466-46003520)
chr1 (155-191)||(5975545-5975581)
chr1 (151-211)||(51193149-51193209)
chr1 (156-211)||(31436818-31436873)
chr1 (151-210)||(43755697-43755756)
chr1 (156-211)||(44641921-44641976)
chr1 (153-211)||(8464531-8464589)
chr1 (156-210)||(31427976-31428030)
chr1 (157-211)||(44112453-44112507)
chr1 (157-211)||(50226897-50226951)
chr1 (158-211)||(15061845-15061898)
chr1 (158-211)||(28253015-28253068)
chr1 (157-202)||(50062001-50062046)
chr1 (157-210)||(52233240-52233293)
chr1 (159-211)||(11068426-11068478)
chr1 (155-207)||(39669803-39669855)
[»] chr2 (11 HSPs)
chr2 (155-211)||(6365183-6365239)
chr2 (157-211)||(1889146-1889200)
chr2 (158-211)||(32688562-32688615)
chr2 (156-211)||(13553145-13553200)
chr2 (157-211)||(11229339-11229393)
chr2 (157-211)||(15283268-15283322)
chr2 (157-211)||(34139056-34139110)
chr2 (157-211)||(5167758-5167814)
chr2 (158-211)||(5455471-5455524)
chr2 (158-211)||(9449433-9449486)
chr2 (158-211)||(36587486-36587539)
[»] scaffold0204 (1 HSPs)
scaffold0204 (157-211)||(27338-27392)
[»] chr7 (14 HSPs)
chr7 (157-211)||(24267665-24267719)
chr7 (156-210)||(31009659-31009713)
chr7 (158-211)||(40842405-40842458)
chr7 (155-211)||(23761056-23761112)
chr7 (155-211)||(46651669-46651725)
chr7 (149-211)||(8904424-8904487)
chr7 (157-208)||(41966331-41966382)
chr7 (157-211)||(28824502-28824556)
chr7 (158-211)||(40212507-40212560)
chr7 (158-211)||(48866948-48867001)
chr7 (159-211)||(2790178-2790230)
chr7 (158-210)||(31364903-31364955)
chr7 (155-211)||(34304696-34304752)
chr7 (152-208)||(43025803-43025859)
[»] chr6 (8 HSPs)
chr6 (157-196)||(26860636-26860675)
chr6 (158-211)||(18792450-18792503)
chr6 (158-211)||(32457270-32457323)
chr6 (160-211)||(29643435-29643486)
chr6 (157-211)||(3821377-3821431)
chr6 (157-211)||(29383556-29383610)
chr6 (157-211)||(32253779-32253833)
chr6 (157-210)||(30796094-30796147)
[»] chr8 (17 HSPs)
chr8 (157-211)||(7678731-7678785)
chr8 (157-211)||(9738711-9738765)
chr8 (157-211)||(11879508-11879562)
chr8 (157-211)||(11896924-11896978)
chr8 (157-211)||(27630896-27630950)
chr8 (157-211)||(34473948-34474002)
chr8 (157-210)||(8841029-8841082)
chr8 (158-211)||(32174954-32175007)
chr8 (155-211)||(40102020-40102076)
chr8 (155-206)||(8074747-8074798)
chr8 (158-209)||(10553103-10553154)
chr8 (152-211)||(42716314-42716373)
chr8 (157-191)||(324121-324155)
chr8 (157-211)||(34996378-34996432)
chr8 (157-211)||(45101395-45101449)
chr8 (158-211)||(30943857-30943910)
chr8 (158-211)||(43290883-43290936)
[»] chr3 (18 HSPs)
chr3 (157-211)||(108430-108484)
chr3 (157-211)||(5398917-5398971)
chr3 (157-210)||(23920298-23920351)
chr3 (159-208)||(42104466-42104515)
chr3 (154-211)||(46003701-46003758)
chr3 (155-202)||(24537216-24537263)
chr3 (148-211)||(41308990-41309053)
chr3 (157-211)||(6126453-6126507)
chr3 (157-211)||(12792637-12792691)
chr3 (157-211)||(18169156-18169210)
chr3 (157-211)||(20215947-20216001)
chr3 (157-211)||(22813071-22813125)
chr3 (157-211)||(26279883-26279937)
chr3 (153-211)||(28300666-28300724)
chr3 (157-211)||(30839456-30839510)
chr3 (156-210)||(34607939-34607993)
chr3 (158-211)||(32457773-32457826)
chr3 (157-210)||(51410805-51410858)
[»] scaffold0511 (1 HSPs)
scaffold0511 (158-211)||(11638-11691)
[»] scaffold0154 (1 HSPs)
scaffold0154 (155-211)||(9866-9922)
[»] scaffold0131 (1 HSPs)
scaffold0131 (159-211)||(15552-15604)
[»] scaffold0057 (1 HSPs)
scaffold0057 (157-211)||(38878-38932)
[»] scaffold0014 (1 HSPs)
scaffold0014 (157-211)||(199265-199319)
[»] scaffold0009 (1 HSPs)
scaffold0009 (157-211)||(190900-190954)
[»] scaffold0508 (1 HSPs)
scaffold0508 (158-211)||(11554-11607)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 23830596 - 23830440
Alignment:
Q  1 atattatctaaatataatatctatcttgactttagtggaaatcatgcacatgaatttatttatttttagacaaagaaaagctagttgggcctcgggagct 100  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23830596 atattatctaaatttaatatctatcttgactttagtagaaatcatgcacatgaatttatttatttttagacaaagaaaagctagttgggcctcgggagct 23830497  T
Q  101 cgctagggtcaagaaaagtcaccaaggttgagaaagtagtaaggtacttatatatta 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23830496 cgctagggtcaagaaaagtcaccaaggttgagaaagtagtaaggtacttatatatta 23830440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 47540135 - 47540188
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||||||||||| |||||| |||||||||||| || ||||||||    
T  47540135 gagaaatgatatatgtacatccactttttaacaattttttgataactttctctc 47540188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 34116614 - 34116558
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||| |||||| || |||| |||||| |||||||||||||||||||    
T  34116614 ttagagaaatgatatttgtacaaccactttgtgacaactttttgacaattttctctc 34116558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 50158995 - 50159045
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttct 208  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||| |||||    
T  50158995 gagaaatgatatatgtacatccactttttgacaactttttaacaactttct 50159045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 23347775 - 23347828
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| ||||||||| |||| |||||| ||||| |||||||||||||    
T  23347775 gagaaatgatatttgtacatccactttgtgacaactttttaacaattttctctc 23347828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 25140026 - 25139973
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| || |||| | ||||||||||||||||||||||||    
T  25140026 gagaaatgatatttgtacaaccactttattacaattttttgacaattttctctc 25139973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 31147227 - 31147284
Alignment:
Q  154 attagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||||| |||||| || |||| | ||||||||||||||| ||||||||    
T  31147227 attagagaaatgatatttgtacaaccactttattacaattttttgacaactttctctc 31147284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 4896578 - 4896518
Alignment:
Q  151 tatattagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||| ||||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  4896578 tatataagagaaatgatatttgtacaaccactttgtgacaactttttgacaactttctctc 4896518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 40409240 - 40409184
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||| ||||||||  |||| ||||| ||||||||||| ||||||||    
T  40409240 ttagagaaatgatatttgtacatctactttgtgacagttttttgacaactttctctc 40409184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 39068021 - 39067978
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgaca 201  Q
    ||||||||||||||||||||||  |||||||||| |||||||||    
T  39068021 gagaaatgatatatgtacatccattttttgacaactttttgaca 39067978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 44133544 - 44133583
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaatttttt 197  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  44133544 gagaaatgatatatgtacatccacttttttacaatttttt 44133583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 46566928 - 46566982
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| ||||||||| |||| |||||| |||| ||||| ||||||||    
T  46566928 agagaaatgatatttgtacatccactttgtgacaacttttagacaactttctctc 46566982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 48743713 - 48743763
Alignment:
Q  161 aaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||| |||||| ||  ||||| ||||||||||||||||||||||||    
T  48743713 aaatgatatttgtacaaccaatttttaacaattttttgacaattttctctc 48743763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 169573 - 169520
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| ||  ||| |||||| |||||||||||||||||||    
T  169573 gagaaatgatatttgtacaaccattttgtgacaactttttgacaattttctctc 169520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 38133975 - 38134024
Alignment:
Q  153 tattagagaaatgatatatgtacatccgctttttgacaattttttgacaa 202  Q
    |||||||||||| |||| |||||| || |||| |||||||||||||||||    
T  38133975 tattagagaaattatatttgtacaaccactttgtgacaattttttgacaa 38134024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 44165909 - 44165962
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| || ||||  |||||||||||||||| ||||||||    
T  44165909 gagaaatgatatttgtacaaccactttgcgacaattttttgacaactttctctc 44165962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 46794572 - 46794519
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  46794572 gagaaatgatatttgtacaaccactttctgacaactttttgacaactttctctc 46794519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 52392296 - 52392243
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| ||||||||| |||| |||||| |||||||||| ||| ||||    
T  52392296 gagaaatgatatttgtacatccactttgtgacaactttttgacaactttatctc 52392243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 3664834 - 3664778
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||||||| |||||  |||| ||||||  |||||||||| |||||||    
T  3664834 ttagagaaatgatatatgcacatctactttgtgacaacattttgacaatcttctctc 3664778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 12074224 - 12074176
Alignment:
Q  156 tagagaaatgatatatgtacatccgctttttgacaattttttgacaatt 204  Q
    |||||||||||||| |||||| ||  ||| |||||||||||||||||||    
T  12074224 tagagaaatgatatttgtacaaccattttatgacaattttttgacaatt 12074176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 19910809 - 19910865
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||| |||| ||  ||||| ||||||||| ||||| ||||||||    
T  19910809 ttagagaaatgatatatttacaaccatttttttacaatttttggacaactttctctc 19910865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 35580124 - 35580176
Alignment:
Q  156 tagagaaatgatatatgtacatccgctttttgacaattttttgacaattttct 208  Q
    |||| ||||||||| |||||| ||  ||| |||||||||||||||||||||||    
T  35580124 tagataaatgatatttgtacagccattttctgacaattttttgacaattttct 35580176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 20591546 - 20591492
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  20591546 agagaaatgatatatgtacatccactttttgacaattttttgacaactttctctc 20591492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 39191907 - 39191852
Alignment:
Q  156 tagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||    
T  39191907 tagagaaatgatatatgtacatccactttttaacaattttttgacaactttctctc 39191852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 12662018 - 12661965
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||    
T  12662018 gagaaatgatatttgtacatccactttgtgacaattttttgacaactttctctc 12661965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 9714208 - 9714154
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||||||||| || |||| |||||| ||||| |||||||||||||    
T  9714208 agagaaatgatatatgtacaaccactttatgacaactttttaacaattttctctc 9714154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 34381012 - 34381065
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  34381012 gagaaatgatatttgtacaaccactttgtgacaactttttgacaactttctctc 34381065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 38500942 - 38500995
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    ||||||||||||| |||||| ||  ||| ||||||||||||||||| |||||||    
T  38500942 agagaaatgatatttgtacaaccattttgtgacaattttttgacaactttctct 38500995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 39595272 - 39595325
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  39595272 gagaaatgatatttgtacaaccactttgtgacaactttttgacaactttctctc 39595325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 19827448 - 19827392
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||| ||||||||| |||| | || |||| ||||||||||||||||||||| ||||    
T  19827448 ttagaaaaatgatatctgtataaccactttgtgacaattttttgacaattttatctc 19827392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 24431692 - 24431636
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||| |||||||||| |||||| || ||||  ||||| |||||||||||||||||||    
T  24431692 ttagggaaatgatatttgtacaaccactttaagacaactttttgacaattttctctc 24431636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 27340866 - 27340922
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||| ||||||  | |||| | | ||||||||||||||||||||||    
T  27340866 ttagagaaatgatatttgtacaatcactttattataattttttgacaattttctctc 27340922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 24910206 - 24910152
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  24910206 agagaaatgatatatgtacatccactttttaacaattttttgacaattttctctc 24910152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 24611844 - 24611897
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||||||||||| |||||| |||| |||||||||| ||||||||    
T  24611844 gagaaatgatatatgtacatccactttttaacaactttttgacaactttctctc 24611897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 1724301 - 1724250
Alignment:
Q  159 agaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  1724301 agaaatgatatatgtacatccactttttgacaat-ttttgacaactttctctc 1724250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 12489651 - 12489599
Alignment:
Q  159 agaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||||||||| | ||||| ||||||||||||||| ||||||||    
T  12489651 agaaatgatatatgtacatctgttttttaacaattttttgacaactttctctc 12489599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 38233272 - 38233326
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||| |||||||||||  |||||||||||||||| |||||||| ||||    
T  38233272 agagaaatgatgtatgtacatccattttttgacaattttttaacaattttttctc 38233326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 46003466 - 46003520
Alignment:
Q  156 tagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    ||||||||||||||||||| ||||  ||| |||||||||||| ||||||||||||    
T  46003466 tagagaaatgatatatgtatatccattttgtgacaattttttaacaattttctct 46003520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 5975545 - 5975581
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaa 191  Q
    ||||||||||||||||||||||||| |||||||||||    
T  5975545 ttagagaaatgatatatgtacatccactttttgacaa 5975581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 51193209 - 51193149
Alignment:
Q  151 tatattagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||||| |||||||||  ||| | ||||||||| ||||| ||||||||    
T  51193209 tatattagagaaatgatatttgtacatccattttataacaatttttggacaactttctctc 51193149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 31436818 - 31436873
Alignment:
Q  156 tagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||| |||||| || |||| | |||| |||||||||||||||||||    
T  31436818 tagagaaatgatatttgtacaaccactttctcacaactttttgacaattttctctc 31436873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 43755756 - 43755697
Alignment:
Q  151 tatattagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    ||||| ||||||||||||| |||||| ||  ||| ||| |||||||||||||||||||||    
T  43755756 tatataagagaaatgatatttgtacaaccattttatgataattttttgacaattttctct 43755697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 44641976 - 44641921
Alignment:
Q  156 tagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||| |||||| || |||| | ||||||||||||||| ||||||||    
T  44641976 tagagaaatgatatttgtacaaccactttattacaattttttgacaactttctctc 44641921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 8464589 - 8464531
Alignment:
Q  153 tattagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||| |||||||||||| |||||| || |||| | |||| |||||||||||||||||||    
T  8464589 tatttgagaaatgatatttgtacaaccactttattacaactttttgacaattttctctc 8464531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 31428030 - 31427976
Alignment:
Q  156 tagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    |||||||||||||| |||||| || |||| ||||||||| ||||||| |||||||    
T  31428030 tagagaaatgatatttgtacaaccactttgtgacaatttcttgacaactttctct 31427976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 44112453 - 44112507
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| | ||||||||||||||| ||||||||    
T  44112453 agagaaatgatatttgtacaaccactttattacaattttttgacaactttctctc 44112507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 50226951 - 50226897
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  50226951 agagaaatgatatttgtacaaccactttgtgacaactttttgacaactttctctc 50226897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 15061845 - 15061898
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||| | || |||| |||||| |||||||||||||||||||    
T  15061845 gagaaatgatatttgtataaccactttgtgacaactttttgacaattttctctc 15061898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 28253015 - 28253068
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| || |||| | |||| |||||||||||||||||||    
T  28253015 gagaaatgatatttgtacaaccactttctcacaactttttgacaattttctctc 28253068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 50062046 - 50062001
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaa 202  Q
    ||||||||||||| ||||||||| |||| ||| |||||||||||||    
T  50062046 agagaaatgatatttgtacatccactttatgataattttttgacaa 50062001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 52233293 - 52233240
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    ||||||||||||| |||||| ||  ||| | |||||||||||||||||||||||    
T  52233293 agagaaatgatatttgtacaaccattttctcacaattttttgacaattttctct 52233240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 11068426 - 11068478
Alignment:
Q  159 agaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||| |||||| || |||| | ||||||||||||||| ||||||||    
T  11068426 agaaatgatatttgtacaaccactttattacaattttttgacaactttctctc 11068478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 39669803 - 39669855
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttc 207  Q
    ||||||||||||||| |||||| ||  ||| ||||||||||||||||| ||||    
T  39669803 ttagagaaatgatatttgtacaaccattttgtgacaattttttgacaactttc 39669855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 6365183 - 6365239
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||| |||||| || |||| ||||||||||||||||||||||||||    
T  6365183 ttagagaaatgatatttgtacaaccactttgtgacaattttttgacaattttctctc 6365239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 1889146 - 1889200
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| ||||||||||||||||| ||||||||    
T  1889146 agagaaatgatatttgtacaaccactttctgacaattttttgacaactttctctc 1889200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 32688615 - 32688562
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| || |||| ||||||||||||||||| ||||||||    
T  32688615 gagaaatgatatttgtacaaccactttctgacaattttttgacaactttctctc 32688562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 13553145 - 13553200
Alignment:
Q  156 tagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||| |||||| || |||| ||| ||||||| ||||||||||||||    
T  13553145 tagagaaatgatatttgtacaaccactttgtgataatttttggacaattttctctc 13553200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 11229393 - 11229339
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| ||||||||| |||| |||||| || ||||||| ||||||||    
T  11229393 agagaaatgatatttgtacatccactttgtgacaacttcttgacaactttctctc 11229339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 15283322 - 15283268
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| ||||||||||| ||||| ||||||||    
T  15283322 agagaaatgatatttgtacaaccactttgtgacaatttttagacaactttctctc 15283268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 34139110 - 34139056
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| ||||||||  |||| ||| ||||||||||||||||| ||||    
T  34139110 agagaaatgatatttgtacatctactttgtgataattttttgacaattttatctc 34139056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 5167814 - 5167758
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaatttttt--gacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| ||||||||||||  ||||||||||||||    
T  5167814 agagaaatgatatttgtacaaccactttgtgacaatttttttagacaattttctctc 5167758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 5455524 - 5455471
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| ||||||||| |||| ||||||  ||||||||| ||||||||    
T  5455524 gagaaatgatatttgtacatccactttgtgacaaccttttgacaactttctctc 5455471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 9449486 - 9449433
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||||||||| | |||||||| || ||||| |||| ||||||||    
T  9449486 gagaaatgatatatgtacattcactttttgataactttttaacaactttctctc 9449433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 36587539 - 36587486
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| || ||| ||  ||||||||||||||||||||| ||||||||    
T  36587539 gagaaatgatatttgaacaaccattttttgacaattttttgacaactttctctc 36587486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 27338 - 27392
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||| ||||||||    
T  27338 agagaaatgatatatgtacatccattttgtgacaattttttgacaactttctctc 27392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 24267719 - 24267665
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||    
T  24267719 agagaaatgatatatgtacatccactttttgacaacttttagacaactttctctc 24267665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 31009713 - 31009659
Alignment:
Q  156 tagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    ||||||||||||||||||||||   ||||||||||||||||| ||||||||||||    
T  31009713 tagagaaatgatatatgtacatttactttttgacaattttttaacaattttctct 31009659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 40842405 - 40842458
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| ||||||||| |||| ||||||| ||||||||| ||||||||    
T  40842405 gagaaatgatatttgtacatccactttgtgacaatcttttgacaactttctctc 40842458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 23761056 - 23761112
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||||||||||   ||||||| || |||||||||| ||||||||    
T  23761056 ttagagaaatgatatatgtacatcgattttttgataactttttgacaactttctctc 23761112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 46651669 - 46651725
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||||||||||| |  |||| |||||||||||| |||| ||||||||    
T  46651669 ttagagaaatgatatatgtacaactactttatgacaattttttaacaactttctctc 46651725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 8904487 - 8904424
Alignment:
Q  149 tatatattagagaaatgatatatgtacatccgctttttgacaattttt-tgacaattttctctc 211  Q
    ||||||||||||||||||||| || ||| ||| ||| ||| ||||||| |||||||||||||||    
T  8904487 tatatattagagaaatgatatttgaacaaccgttttgtgataatttttgtgacaattttctctc 8904424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 41966331 - 41966382
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttct 208  Q
    ||||||||||||| |||||| || |||| ||||||||||||||||| |||||    
T  41966331 agagaaatgatatttgtacaaccactttgtgacaattttttgacaactttct 41966382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 28824502 - 28824556
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  28824502 agagaaatgatatttgtacaaccactttctgacaactttttgacaactttctctc 28824556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 40212560 - 40212507
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||| |||| |||||| || |||| | ||||||||||||||||||||||||    
T  40212560 gagaaataatatttgtacaaccactttctaacaattttttgacaattttctctc 40212507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 48867001 - 48866948
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  48867001 gagaaatgatatttgtacagccactttgtgacaactttttgacaactttctctc 48866948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 2790178 - 2790230
Alignment:
Q  159 agaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||| |||||| || |||| | ||||||||||||||| ||||||||    
T  2790178 agaaatgatatttgtacaaccactttgtaacaattttttgacaactttctctc 2790230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 31364955 - 31364903
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    |||||||||||| |||||  || |||| | |||||||||||||||||||||||    
T  31364955 gagaaatgatatttgtacgaccactttattacaattttttgacaattttctct 31364903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 34304752 - 34304696
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||| ||||||||| |||||| |   ||||||||||||||| ||||||||||||||    
T  34304752 ttagaaaaatgatatttgtacaactattttttgacaatttttagacaattttctctc 34304696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 43025803 - 43025859
Alignment:
Q  152 atattagagaaatgatatatgtacatccgctttttgacaattttttgacaattttct 208  Q
    |||| ||||||||||||| |||||| || |||||||| |||||| |||||| |||||    
T  43025803 atataagagaaatgatatttgtacaaccactttttgataattttatgacaactttct 43025859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 26860675 - 26860636
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttt 196  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  26860675 agagaaatgatatatgtacatccactttttgacaattttt 26860636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 18792503 - 18792450
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||| ||||||| ||||||||||| ||||| |||| ||||||||    
T  18792503 gagaaatgatatatctacatccactttttgacaactttttaacaactttctctc 18792450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 32457323 - 32457270
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| || |||| |||||| |||||||||||||||||||    
T  32457323 gagaaatgatatttgtacaaccactttgtgacaactttttgacaattttctctc 32457270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 29643486 - 29643435
Alignment:
Q  160 gaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||| ||  ||| ||||||||||||||||| ||||||||    
T  29643486 gaaatgatatatgtacaaccattttctgacaattttttgacaactttctctc 29643435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 3821377 - 3821431
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| | ||||||||||||||| ||||||||    
T  3821377 agagaaatgatatttgtacaaccactttattacaattttttgacaactttctctc 3821431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 29383556 - 29383610
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  29383556 agagaaatgatatttgtacaaccactttctgacaactttttgacaactttctctc 29383610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 32253779 - 32253833
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||||||| |||||| ||| |||||||||||    
T  32253779 agagaaatgatatttgtacaaccactttttgataattttgtgataattttctctc 32253833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 30796147 - 30796094
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    ||||||||||||| |||||| || |||| |||||||||||| |||| |||||||    
T  30796147 agagaaatgatatttgtacaaccactttgtgacaatttttttacaactttctct 30796094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 7678731 - 7678785
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || ||||||||||| ||| |||||||||||||||    
T  7678731 agagaaatgatatttgtacaaccactttttgacaactttgtgacaattttctctc 7678785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 9738765 - 9738711
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| | ||||||||||||||||||||||||    
T  9738765 agagaaatgatatttgtacaaccactttctcacaattttttgacaattttctctc 9738711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 11879562 - 11879508
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||||| ||| |||| |||||| |||||||||| ||||||||    
T  11879562 agagaaatgatatatgtacgtccactttgtgacaactttttgacaactttctctc 11879508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 11896978 - 11896924
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||||| ||| |||| |||||| |||||||||| ||||||||    
T  11896978 agagaaatgatatatgtacgtccactttgtgacaactttttgacaactttctctc 11896924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 27630896 - 27630950
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||||||  ||| ||||||||||||||||| ||||||||    
T  27630896 agagaaatgatatttgtacatccattttatgacaattttttgacaactttctctc 27630950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 34473948 - 34474002
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| ||||||| | |||| ||||||| ||||||||||||||||||    
T  34473948 agagaaatgatatttgtacattcactttgtgacaatcttttgacaattttctctc 34474002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 8841029 - 8841082
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    ||||||||||||| |||||| || |||| ||| |||||||||||||||||||||    
T  8841029 agagaaatgatatttgtacaaccactttgtgagaattttttgacaattttctct 8841082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 32174954 - 32175007
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||  |||||||| |||| ||||||||||||||||| ||||||||    
T  32174954 gagaaatgatattcgtacatccactttgtgacaattttttgacaactttctctc 32175007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 40102020 - 40102076
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||| |||||| || |||||| |||| |||||||||| ||||||||    
T  40102020 ttagagaaatgatatttgtacaaccactttttcacaactttttgacaactttctctc 40102076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 8074798 - 8074747
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaatttt 206  Q
    ||||||||||||||| |||||| || |||| |||||||||||| ||||||||    
T  8074798 ttagagaaatgatatttgtacaaccactttatgacaattttttaacaatttt 8074747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 10553154 - 10553103
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctc 209  Q
    |||||||||||| |||||| || |||| ||||||||||||||||| ||||||    
T  10553154 gagaaatgatatttgtacaaccactttctgacaattttttgacaactttctc 10553103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 42716314 - 42716373
Alignment:
Q  152 atattagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||| ||||||||||||| |||||| || |||||| | ||||||||||||| ||||||||    
T  42716314 atataagagaaatgatatttgtacaaccactttttcataattttttgacaactttctctc 42716373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 324155 - 324121
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaa 191  Q
    ||||||||||||||||||||||| |||||||||||    
T  324155 agagaaatgatatatgtacatccactttttgacaa 324121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 34996432 - 34996378
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| | ||||||||||||||| ||||||||    
T  34996432 agagaaatgatatttgtacaaccactttattacaattttttgacaactttctctc 34996378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 45101395 - 45101449
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  45101395 agagaaatgatatttgtacaaccactttgtgacaactttttgacaactttctctc 45101449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 30943910 - 30943857
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| ||  ||||| |||| |||||||||||||||||||    
T  30943910 gagaaatgatatttgtacaaccaatttttaacaactttttgacaattttctctc 30943857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 43290936 - 43290883
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| ||||||||| |||| |||||| ||||| | |||||||||||    
T  43290936 gagaaatgatatttgtacatccactttatgacaactttttaataattttctctc 43290883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 108430 - 108484
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| ||||||||||||||||| ||||||||    
T  108430 agagaaatgatatttgtacaaccactttgtgacaattttttgacaactttctctc 108484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 5398917 - 5398971
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| ||||||||||||||||| ||||||||    
T  5398917 agagaaatgatatttgtacaaccactttgtgacaattttttgacaactttctctc 5398971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 23920298 - 23920351
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    |||||||||| |||||||||| | ||||||||||||||||| |||| |||||||    
T  23920298 agagaaatgacatatgtacattcactttttgacaattttttaacaactttctct 23920351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 42104466 - 42104515
Alignment:
Q  159 agaaatgatatatgtacatccgctttttgacaattttttgacaattttct 208  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||| |||||    
T  42104466 agaaatgatatatgtacatccactttttgacaactttttaacaactttct 42104515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 46003701 - 46003758
Alignment:
Q  154 attagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||||| ||||||||| |||| | ||||| ||||||||| ||||||||    
T  46003701 attagagaaatgatatttgtacatccactttcttacaatcttttgacaactttctctc 46003758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 24537216 - 24537263
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaa 202  Q
    ||||||||||||||| ||||||||| |||| |||||| ||||||||||    
T  24537216 ttagagaaatgatatttgtacatccactttgtgacaactttttgacaa 24537263  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 41308990 - 41309053
Alignment:
Q  148 ttatatattagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||| || |||| ||||||| |||||| || |||| |||||||||||| |||||||||||||    
T  41308990 ttatatttttgagatatgatatttgtacaaccactttgtgacaattttttaacaattttctctc 41309053  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 6126453 - 6126507
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||||||| | | || |||||| |||||||||| ||||||||    
T  6126453 agagaaatgatatatgtacattcacattctgacaactttttgacaactttctctc 6126507  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 12792637 - 12792691
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| ||||||||||| ||||| ||||||||    
T  12792637 agagaaatgatatttgtacaaccactttgtgacaatttttagacaactttctctc 12792691  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 18169156 - 18169210
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  18169156 agagaaatgatatttgtacaaccactttgtgacaactttttgacaaatttctctc 18169210  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 20215947 - 20216001
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| ||||||||||| ||||| ||||||||    
T  20215947 agagaaatgatatttgtacaaccactttgtgacaatttttagacaactttctctc 20216001  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 22813071 - 22813125
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  22813071 agagaaatgatatttgtacaaccactttctgacaactttttgacaactttctctc 22813125  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 26279883 - 26279937
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| |||||| |||||||||| ||||||||    
T  26279883 agagaaatgatatttgtacaaccactttctgacaactttttgacaactttctctc 26279937  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 28300724 - 28300666
Alignment:
Q  153 tattagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||| |||||| || |||| |||||| ||||| |||| ||||||||    
T  28300724 tattagagaaatgatatttgtacaaccactttatgacaactttttaacaactttctctc 28300666  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 30839456 - 30839510
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||||||||  | |||| | |||||||||| |||||||||||||    
T  30839456 agagaaatgatatatgtacaatcactttataacaattttttaacaattttctctc 30839510  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 34607993 - 34607939
Alignment:
Q  156 tagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    |||||||||||||| |||||| || |||| ||||||||||| || ||||||||||    
T  34607993 tagagaaatgatatttgtacaaccactttgtgacaatttttagataattttctct 34607939  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 32457826 - 32457773
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| |||||| || ||||||||||| ||| |||||| ||||||||    
T  32457826 gagaaatgatatttgtacaaccactttttgacaactttgtgacaactttctctc 32457773  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 51410805 - 51410858
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctct 210  Q
    ||||||||||||| |||||| || |||| | |||| ||||||||||||||||||    
T  51410805 agagaaatgatatttgtacaaccactttctcacaactttttgacaattttctct 51410858  T

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Target: scaffold0511 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 11638 - 11691
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||||| ||||||| ||||||||||| ||||| |||| ||||||||    
T  11638 gagaaatgatatatctacatccactttttgacaactttttaacaactttctctc 11691  T

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Target: scaffold0154 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 9922 - 9866
Alignment:
Q  155 ttagagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||||| ||||||  |  ||||| ||||||||||||||||||||||||    
T  9922 ttagagaaatgatatttgtacaatcattttttcacaattttttgacaattttctctc 9866  T

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Target: scaffold0131 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 15604 - 15552
Alignment:
Q  159 agaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||| |||||| || |||| |||||| |||||||||||||||||||    
T  15604 agaaatgatatttgtacaaccactttgtgacaactttttgacaattttctctc 15552  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 38878 - 38932
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||| |||| |||||| || |||| |||||||||||||| |||||||||||    
T  38878 agagaaataatatttgtacaaccactttgtgacaattttttgaaaattttctctc 38932  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 199265 - 199319
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| |||||| || |||| | ||||||||||||||| ||||||||    
T  199265 agagaaatgatatttgtacaaccactttattacaattttttgacaactttctctc 199319  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 190954 - 190900
Alignment:
Q  157 agagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    ||||||||||||| | ||||||| |||| ||| ||||||||||||| ||||||||    
T  190954 agagaaatgatatgtctacatccactttatgataattttttgacaactttctctc 190900  T

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Target: scaffold0508 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 11607 - 11554
Alignment:
Q  158 gagaaatgatatatgtacatccgctttttgacaattttttgacaattttctctc 211  Q
    |||||||||||| ||||||||  |||| |||||| || ||||||||||||||||    
T  11607 gagaaatgatatttgtacatctactttgtgacaacttcttgacaattttctctc 11554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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