View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3596_high_2 (Length: 448)
Name: NF3596_high_2
Description: NF3596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3596_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 40695958 - 40695524
Alignment:
| Q |
1 |
cgttccatcatccaaggcatacaatccacatacaacaaggtattatgattaacttgttttgagttttgacataatttatgtgaaataatgcttataagct |
100 |
Q |
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| T |
40695958 |
cgttccatcatccaaggcatacaatccacatacaacaaggtattatgattaacttgttttgagttgtgacataatttatttgaaataatgcttataagct |
40695859 |
T |
|
| Q |
101 |
aatatgagttattcattttgtgtttttctttgtaaatatt-aacaataggtctctacttgttatgatcaccactgccatgtgtttcatctgcattggttt |
199 |
Q |
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| T |
40695858 |
aatatgagttattcattttgtgtttttctttgtaaatatttaacaacaggtctctacttgctatgatcaccactgccatgtgtttcatctgcattggttt |
40695759 |
T |
|
| Q |
200 |
ccattgaaaagatgcaccttttgttaaggagattggagatatgtagattgtgacaaagacattgagttgtaatatcaagatgaaagcaataattccctat |
299 |
Q |
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| T |
40695758 |
ccattgaaaagatgcaccttttgttaaggagattggagatatgtagattgtgacaaagacattgagttgtaatatcaagatgaaagcaataattccctat |
40695659 |
T |
|
| Q |
300 |
attctttttctttaaaacaaattatttatgccaagtatgaaagctatatataggcaataacattggttacttactagtagtagttaccacgatacattgt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40695658 |
attctttttctttaaaacaaattatttatgccaagtatgaaagctatatataggcaataacattggttacttactagtagtagttactacgatacattgt |
40695559 |
T |
|
| Q |
400 |
cggtttaatttttattggatacaagttaaagtttg |
434 |
Q |
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| T |
40695558 |
cggtttaatttttattggatacaagttaaagtttg |
40695524 |
T |
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