View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3596_high_6 (Length: 341)
Name: NF3596_high_6
Description: NF3596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3596_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 14802240 - 14802541
Alignment:
| Q |
9 |
acatcatcaggaaaggaagggtgacaagtttgctagcagaagtaggaagtgtgtgtttgtaggctacccacatggaaagaaaggatggaagctatttgac |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14802240 |
acataatcaggaaaggaagggtgacaagtttgctagcagaagtaggaagtgtgtgtttgtaggctacccacatggaaagaaaggatggaagctatttgac |
14802339 |
T |
|
| Q |
109 |
ttggaaaccaaaacttattttgtatcaagagacgttgannnnnnngaagctggatttccctttggacaagaacctgtgatctctagtagtgaattaatga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14802340 |
ttggaaaccaaaacttattttgtatcaagagacgttgatttttttgaagctggatttccctttggacaagaacctgtgatctctagtagtgaattaatga |
14802439 |
T |
|
| Q |
209 |
cagacatgctagatggagatgttgctgctgatgatgaaagtaatcatagtgagcaaattataaatgttgaatttccaagagaagagattcatgatgacgt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14802440 |
cagacatgctagatggagatgttgctgctgatgatgaaagtgatcatagtgagcaaattataaatgttgaatttccaagagaagagattcatgatgacgt |
14802539 |
T |
|
| Q |
309 |
ga |
310 |
Q |
| |
|
|| |
|
|
| T |
14802540 |
ga |
14802541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 14811114 - 14811415
Alignment:
| Q |
9 |
acatcatcaggaaaggaagggtgacaagtttgctagcagaagtaggaagtgtgtgtttgtaggctacccacatggaaagaaaggatggaagctatttgac |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14811114 |
acataatcaggaaaggaagggtgacaagtttgctagcagaagtaggaagtgtgtgtttgtaggctacccacatggaaagaaaggatggaagctatttgac |
14811213 |
T |
|
| Q |
109 |
ttggaaaccaaaacttattttgtatcaagagacgttgannnnnnngaagctggatttccctttggacaagaacctgtgatctctagtagtgaattaatga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14811214 |
ttggaaaccaaaacttattttgtatcaagagacgttgatttttttgaagctggatttccctttggacaagaacctgtgatctctagtagtgaattaatga |
14811313 |
T |
|
| Q |
209 |
cagacatgctagatggagatgttgctgctgatgatgaaagtaatcatagtgagcaaattataaatgttgaatttccaagagaagagattcatgatgacgt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14811314 |
cagacatgctagatggagatgttgctgctgatgatgaaagtgatcatagtgagcaaattataaatgttgaatttccaagagaagagattcatgatgacgt |
14811413 |
T |
|
| Q |
309 |
ga |
310 |
Q |
| |
|
|| |
|
|
| T |
14811414 |
ga |
14811415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 6382028 - 6382147
Alignment:
| Q |
21 |
aaggaagggtgacaagtttgctagcagaagtaggaagtgtgtgtttgtaggctacccacatggaaagaaaggatggaagctatttgacttggaaaccaaa |
120 |
Q |
| |
|
|||||| ||||| |||||| | ||| |||| | ||||||||| |||||||| ||||| | || ||||||||||||||| | ||||| | || | |||| |
|
|
| T |
6382028 |
aaggaaaggtgataagtttaccagccgaagcaagaagtgtgtatttgtaggataccctcccgggaagaaaggatggaagttgtttgatctagacaacaaa |
6382127 |
T |
|
| Q |
121 |
acttattttgtatcaagaga |
140 |
Q |
| |
|
| ||||||||| |||||||| |
|
|
| T |
6382128 |
aattattttgtgtcaagaga |
6382147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 1619725 - 1619606
Alignment:
| Q |
21 |
aaggaagggtgacaagtttgctagcagaagtaggaagtgtgtgtttgtaggctacccacatggaaagaaaggatggaagctatttgacttggaaaccaaa |
120 |
Q |
| |
|
|||||| ||||| |||||| | ||| |||| | ||||||||| |||||||| ||||| | || ||||||||||||||| | ||||| | || | |||| |
|
|
| T |
1619725 |
aaggaaaggtgataagtttaccagccgaagcaagaagtgtgtatttgtaggataccctcccgggaagaaaggatggaagttgtttgatctagacaacaaa |
1619626 |
T |
|
| Q |
121 |
acttattttgtatcaagaga |
140 |
Q |
| |
|
| ||||||||| |||||||| |
|
|
| T |
1619625 |
aattattttgtgtcaagaga |
1619606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University