View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3596_high_7 (Length: 337)

Name: NF3596_high_7
Description: NF3596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3596_high_7
NF3596_high_7
[»] chr5 (2 HSPs)
chr5 (203-319)||(43285755-43285872)
chr5 (17-61)||(43285566-43285610)
[»] chr8 (2 HSPs)
chr8 (19-60)||(41867509-41867550)
chr8 (203-252)||(41867693-41867742)
[»] chr3 (2 HSPs)
chr3 (19-60)||(10987262-10987303)
chr3 (203-250)||(10987433-10987480)
[»] chr7 (2 HSPs)
chr7 (203-251)||(1973900-1973948)
chr7 (19-60)||(1973717-1973758)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 203 - 319
Target Start/End: Original strand, 43285755 - 43285872
Alignment:
Q  203 aagaaacgatcaagtttgggttgaaaagcagaagaaggagaagatgaaggggtgtgaatggtggaatt-gggggtttatgagtaagaatccattcagtgg 301  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43285755 aagaaacgatcgagtttgggttgaaaagcagaagaaggagaagaggaaggggtgtgaatggtggaattggggggtttatgagtaagaatccattcagtgg 43285854  T
Q  302 ctttgacagtggatttac 319  Q
    ||||||||||||||||||    
T  43285855 ctttgacagtggatttac 43285872  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 43285566 - 43285610
Alignment:
Q  17 tcgtcgagtgttctgggtcggagtcgttcgtacaatggttcatga 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43285566 tcgtcgagtgttctgggtcggagtcgttcgtacaatggttcatga 43285610  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 41867509 - 41867550
Alignment:
Q  19 gtcgagtgttctgggtcggagtcgttcgtacaatggttcatg 60  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  41867509 gtcgagtgttctgggtcggagtcgttcgaacaatggttcatg 41867550  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 41867693 - 41867742
Alignment:
Q  203 aagaaacgatcaagtttgggttgaaaagcagaagaaggagaagatgaagg 252  Q
    ||||||||||| |||||||||||||||| ||||||||| |||| ||||||    
T  41867693 aagaaacgatcgagtttgggttgaaaagtagaagaaggtgaaggtgaagg 41867742  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 10987262 - 10987303
Alignment:
Q  19 gtcgagtgttctgggtcggagtcgttcgtacaatggttcatg 60  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  10987262 gtcgagtgttctgggtcggagtcgttcgaacaatggttcatg 10987303  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 10987433 - 10987480
Alignment:
Q  203 aagaaacgatcaagtttgggttgaaaagcagaagaaggagaagatgaa 250  Q
    ||||||| ||| |||||||||||||||||||||||||| |||| ||||    
T  10987433 aagaaacaatcgagtttgggttgaaaagcagaagaaggtgaaggtgaa 10987480  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 1973900 - 1973948
Alignment:
Q  203 aagaaacgatcaagtttgggttgaaaagcagaagaaggagaagatgaag 251  Q
    ||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  1973900 aagaaacgatcgagtttgggttgaaaagcagaagaaggtgaaggtgaag 1973948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 1973717 - 1973758
Alignment:
Q  19 gtcgagtgttctgggtcggagtcgttcgtacaatggttcatg 60  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  1973717 gtcgagtgttctgggtcggagtcgttcgagcaatggttcatg 1973758  T

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