View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3596_high_9 (Length: 268)
Name: NF3596_high_9
Description: NF3596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3596_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 14802014 - 14802266
Alignment:
| Q |
16 |
atggacgagttgaaaggaaacatagacatatactcaatgtggctcgagcattgagatttcaaggtaatcttcttatttcttttttgggtgaatgtatttt |
115 |
Q |
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| T |
14802014 |
atggacgagttgaaaggaaacatagacatatactcaatgtggctcgagcattgagatttcaaggtaatcttcttatttctttttggggtgaatgtatttt |
14802113 |
T |
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| Q |
116 |
aacggatttatatttgataaatagaacaccgacaacattgctaaatgaaaaatgcccttatgaggtgttgaatgggaagccacctacctatgaacatctt |
215 |
Q |
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| T |
14802114 |
aacggatttatatatgataaatagaacaccgacaacattgctaaatgaaaaatgcccttatgaggtgttgaatgggaagccacctacctatgaacatctt |
14802213 |
T |
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| Q |
216 |
agagtctttggatctctttgttatgcacataatcaggaaaggaagggtgacaa |
268 |
Q |
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| T |
14802214 |
agagtctttggatctctttgttatgcacataatcaggaaaggaagggtgacaa |
14802266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 14810888 - 14811140
Alignment:
| Q |
16 |
atggacgagttgaaaggaaacatagacatatactcaatgtggctcgagcattgagatttcaaggtaatcttcttatttcttttttgggtgaatgtatttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14810888 |
atggacgagttgaaaggaaacatagacatatactcaatgtggctcgagcattgagatttcaaggtaatcttcttatttctttttggggtgaatgtatttt |
14810987 |
T |
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| Q |
116 |
aacggatttatatttgataaatagaacaccgacaacattgctaaatgaaaaatgcccttatgaggtgttgaatgggaagccacctacctatgaacatctt |
215 |
Q |
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| T |
14810988 |
aacggatttatatatgataaatagaacaccgacaacattgctaaatgaaaaatgcccttatgaggtgttgaatgggaagccacctacctatgaacatctt |
14811087 |
T |
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| Q |
216 |
agagtctttggatctctttgttatgcacataatcaggaaaggaagggtgacaa |
268 |
Q |
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| T |
14811088 |
agagtctttggatctctttgttatgcacataatcaggaaaggaagggtgacaa |
14811140 |
T |
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