View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3596_low_1 (Length: 498)
Name: NF3596_low_1
Description: NF3596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3596_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 27 - 481
Target Start/End: Original strand, 41945754 - 41946210
Alignment:
| Q |
27 |
attatatagaaaaaa-tcctgaattttgtggttgaactttcctaggaactttgtccttggaagcacatattttcaaaaaattaaatttcttaaaagtttt |
125 |
Q |
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| T |
41945754 |
attatatagaaaaaaatcatgaattttgtggttgaactttcctaggaactttgtccttggaagcacatattttcaaaaaattaaatttcttaaaagtttt |
41945853 |
T |
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| Q |
126 |
cctcttgttggtttgattccaactccaagaccacgatataccctaatctttttctacaattgattgaaaagcttcattaagagccatttgccataactat |
225 |
Q |
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| T |
41945854 |
cctcttgttggtttgattccaactccaagaccacgatataccctaatctttttctacaattgattgaaaagcttcattaagagccatttgccataactat |
41945953 |
T |
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| Q |
226 |
agaaaattgtgctcttt-cccaacatcaggatctctctaagaatannnnnnnagatccacaaaacattacattaacactttttaaaactaaatatttcaa |
324 |
Q |
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| T |
41945954 |
agaaaattgtgctctttccccaacatcaggatctctctaagaatatttttttagatccacaaaacattacattaacactttttaaaactaaatatttcaa |
41946053 |
T |
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| Q |
325 |
tatattatcacgtcttaactaatgacatgaaatgatttatgttcacaaatcaaataaagaaaaacaagttttcaatcatatttatggacagacgtagata |
424 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41946054 |
tatattatcacgtcttaactaacgacatgaaatgatttatgttcacaaatcaaataaagaaaaacaagttttcaatcatatttatggacagacgtagata |
41946153 |
T |
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| Q |
425 |
acaccaaataaaatatatagatagcaccaaataaatagaacagataaaccttaaact |
481 |
Q |
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| T |
41946154 |
acaccaaataaaatatatagatagcaccaaataaatagaacagataaaccttaaact |
41946210 |
T |
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