View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3596_low_10 (Length: 245)
Name: NF3596_low_10
Description: NF3596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3596_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 43582120 - 43581877
Alignment:
| Q |
2 |
acgatcccgtccacagtctcggtagctgccccagtagtgttgttgaagcatctgccgttcctagccttccaaatcgaccaaagagttgtctgccgaataa |
101 |
Q |
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| T |
43582120 |
acgatcccgtccacagtctcggtagctgccccagtagtgttgttgaagcatctgtcgttcctagccttccaaatcgaccaaagagttgtctgccgaataa |
43582021 |
T |
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| Q |
102 |
gtttcaaaccacttcgctttaagtagtgagaatcacacactttcgttgtggataagcggggaattgcggattcgaagacgtgctccaacacatcaaatgt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43582020 |
gtttcaaaccacttcgctttaagtagtgagaatcacacactttcgttgtggataagcggggaattgcggattcgaagacgtgctccaacacatcaaatgt |
43581921 |
T |
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| Q |
202 |
ccattaagctaccaagttagaggacaacctatacctttgcttct |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43581920 |
ccattaagctaccaagttagaggacaacctatacctttgtttct |
43581877 |
T |
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