View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3596_low_12 (Length: 217)
Name: NF3596_low_12
Description: NF3596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3596_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 41945492 - 41945696
Alignment:
| Q |
9 |
tgcgtaattttacaaactagaggtctaaaaatgttacatatatttattaaaatattttgtaatcaagagctttttagacaaaatatgagaactattttaa |
108 |
Q |
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| T |
41945492 |
tgcgtaaatttacaaactagaggtctaaaaatgttacatatatttattaaaatattttgtaatcaagagctttttagacaaaatatgagaactattttaa |
41945591 |
T |
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| Q |
109 |
tcaaaatataagattttaaatttgacttcataattgtaataaaacattgtttctggtgacccaacacgagannnnnnnnnctttctgtcaactgttatta |
208 |
Q |
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| T |
41945592 |
tcaaaatataagattttaaatttgacttcataattgtaataaaacattgtttctggtgacccaacacgagatatttt----tttctgtcaactgttatta |
41945687 |
T |
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| Q |
209 |
tacgataat |
217 |
Q |
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| T |
41945688 |
tacgataat |
41945696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 41931647 - 41931710
Alignment:
| Q |
13 |
taattttacaaactagaggtctaaaaatgt--tacatatatttattaaaatattttgtaatcaa |
74 |
Q |
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| T |
41931647 |
taattttacaaactcgaggtttaaaaatgtactacatatgtttatcaaaatattttgtaatcaa |
41931710 |
T |
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