View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3596_low_4 (Length: 390)
Name: NF3596_low_4
Description: NF3596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3596_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 4648201 - 4648393
Alignment:
| Q |
47 |
agaagtaattcgtgaggaatcaatggagaaatgtgcagttttcagcaaaaaacgaagaagatgaagaaaaggatcttaacttttgtgataaacttccacc |
146 |
Q |
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| T |
4648201 |
agaagaaattcgtgaggaatcaatggagaaatgtgaagttttcagcaaaaaacgaagaaggtgaagaaaaggatcttaacttttgtaataaacttccacc |
4648300 |
T |
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| Q |
147 |
atggaaatgagagaaaaaagctctgataccatgttatgggaagcaaataatgaaatgaa-ctcatttctcatagatgtaaacgagtgtttctc |
238 |
Q |
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| T |
4648301 |
atggaaatgagagaaaaaagctccgataccatgttatgggaagcaaataatgaaatgaatctcatttctcatagatgtaaatgagtgtttctc |
4648393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 243 - 374
Target Start/End: Original strand, 4648419 - 4648550
Alignment:
| Q |
243 |
gtatttataggcaatatgcatattacaattagcctaattacaagctaaaatgaacatgcttaagtaagctaaacaagttaacttgtatatcaagtaaaca |
342 |
Q |
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| T |
4648419 |
gtatttgtaggcaatatgcatattacaattagcctaattacaagctaaaatgaacatgcttaagtaagctaaactagttaacttgtgtatcaagtaaact |
4648518 |
T |
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| Q |
343 |
aagagcctttactttattatgaccttctttat |
374 |
Q |
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| T |
4648519 |
aggagcctttactttattatgaccttctttat |
4648550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 243 - 372
Target Start/End: Original strand, 4642546 - 4642674
Alignment:
| Q |
243 |
gtatttataggcaatatgcatattacaattagcctaattacaagctaaaatgaacatgcttaagtaagctaaacaagttaacttgtatatcaagtaaaca |
342 |
Q |
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| T |
4642546 |
gtatttataggaaatatgcagattacagttagcctaattacaagctaaaacgaacgtgcttaagtaagct-aactagttaacttgtatctcaagtaaact |
4642644 |
T |
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| Q |
343 |
aagagcctttactttattatgaccttcttt |
372 |
Q |
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| T |
4642645 |
aggagcctttactttattatgaccttcttt |
4642674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 24674531 - 24674475
Alignment:
| Q |
137 |
aacttccaccatggaaatgagagaaaaaagctct-gataccatgttatgggaagcaaa |
193 |
Q |
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| T |
24674531 |
aacttccaccatggaaatgaga-agaaaagctctagataccatcttatggaaagcaaa |
24674475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 63 - 365
Target Start/End: Complemental strand, 8847794 - 8847493
Alignment:
| Q |
63 |
gaatcaatggagaaatgtgcagttttcagcaaaaaacgaagaagatgaagaaaaggatcttaact----tttgtgataaacttccaccatggaaatgaga |
158 |
Q |
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||||||||||||||| | | |||||||||||||||| | |||||||||||| |||| ||||| ||||| | |||||||||| |||||||||||| |
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| T |
8847794 |
gaatcaatggagaaacgcgaagttttcagcaaaaaattat-aagatgaagaaacggattgtaactaacttttgtaacaaacttccacaatggaaatgaga |
8847696 |
T |
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| Q |
159 |
gaaaaaagctctgataccatgttatgggaagcaaataatgaaatgaa-ctcatttctcatagatgtaaacgagtgtttctctcatgtatttataggcaat |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| || | || | | || |||||||||||||| |
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| T |
8847695 |
gaaaaaagctctgataccatgttatgggaagcaaataatgaaaaaaatctcatttctcatagatgtgaatgtgt-atacaagca-atatttataggcaat |
8847598 |
T |
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| Q |
258 |
atgcatattacaattagcctaattacaagctaaaatgaacatgcttaagtaagctaaacaagttaacttgtatatcaagtaaacaaagagcctttacttt |
357 |
Q |
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||| | |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||||| | ||| ||| ||||| |
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| T |
8847597 |
atgaagattacaattaacctaattacaagctataatgaacatgcttaagtaagctaaactagttaac---tatctcaagtaaactaggagacttcacttt |
8847501 |
T |
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| Q |
358 |
attatgac |
365 |
Q |
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|||||||| |
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| T |
8847500 |
attatgac |
8847493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 243 - 365
Target Start/End: Complemental strand, 8854891 - 8854769
Alignment:
| Q |
243 |
gtatttataggcaatatgcatattacaattagcctaattacaagctaaaatgaacatgcttaagtaagctaaacaagttaacttgtatatcaagtaaaca |
342 |
Q |
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|||||||||| ||||||| | |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||| ||||| |
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| T |
8854891 |
gtatttatagacaatatgaagattacaattaacctaattacaagctataatgaacatgcttaagtaagctaaactagttaacttgtatctcaaataaact |
8854792 |
T |
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| Q |
343 |
aagagcctttactttattatgac |
365 |
Q |
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| ||| ||| ||||||||||||| |
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| T |
8854791 |
aggagacttcactttattatgac |
8854769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 34064924 - 34064875
Alignment:
| Q |
137 |
aacttccaccatggaaatgagagaaaaaagct-ctgataccatgttatgg |
185 |
Q |
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||||||| |||||||| |||||||||||||| ||||||||||||||||| |
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| T |
34064924 |
aacttccgccatggaagagagagaaaaaagctcctgataccatgttatgg |
34064875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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