View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3596_low_5 (Length: 371)

Name: NF3596_low_5
Description: NF3596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3596_low_5
NF3596_low_5
[»] chr1 (5 HSPs)
chr1 (16-121)||(18788446-18788551)
chr1 (16-121)||(52730704-52730809)
chr1 (192-239)||(18788614-18788661)
chr1 (192-239)||(52730878-52730925)
chr1 (318-350)||(52731008-52731040)
[»] chr8 (5 HSPs)
chr8 (16-121)||(18079345-18079450)
chr8 (16-121)||(44520551-44520656)
chr8 (192-239)||(18079233-18079280)
chr8 (192-239)||(44520726-44520772)
chr8 (318-350)||(44520855-44520887)
[»] chr5 (3 HSPs)
chr5 (16-121)||(33685465-33685570)
chr5 (194-239)||(33685351-33685396)
chr5 (313-350)||(33685240-33685277)
[»] chr3 (5 HSPs)
chr3 (16-121)||(34905005-34905110)
chr3 (16-120)||(7602631-7602735)
chr3 (192-239)||(7602515-7602562)
chr3 (200-239)||(34904890-34904929)
chr3 (318-350)||(34904774-34904806)
[»] chr2 (2 HSPs)
chr2 (16-121)||(19209425-19209530)
chr2 (192-239)||(19209595-19209642)
[»] chr4 (4 HSPs)
chr4 (16-121)||(54534166-54534271)
chr4 (192-237)||(54534056-54534101)
chr4 (25-103)||(9980042-9980120)
chr4 (318-350)||(54533939-54533971)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 18788446 - 18788551
Alignment:
Q  16 attttacccataactaaaatttgagaattacacaacttgctctaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18788446 attttacccataactaaaatttgagaattacacaacttgccctaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 18788545  T
Q  116 taactc 121  Q
    ||||||    
T  18788546 taactc 18788551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 52730704 - 52730809
Alignment:
Q  16 attttacccataactaaaatttgagaattacacaacttgctctaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52730704 attttacccataactaaaatttgagaattacacaacttgccctaatggatagaatatttataaatacctccagtcttaaatatttaaagtaaacgtgata 52730803  T
Q  116 taactc 121  Q
    ||||||    
T  52730804 taactc 52730809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 18788614 - 18788661
Alignment:
Q  192 tcagacttaacaaaatataatgtgagacatgatcaatggtcatggtaa 239  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  18788614 tcagacttaacaaaatataacgtgagacatgatcaatggtcatggtaa 18788661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 52730878 - 52730925
Alignment:
Q  192 tcagacttaacaaaatataatgtgagacatgatcaatggtcatggtaa 239  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  52730878 tcagacttaacaaaatataacgtgagacataatcaatggtcatggtaa 52730925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 52731008 - 52731040
Alignment:
Q  318 ccatccttactaccaacatgtccagcatcatga 350  Q
    |||||||||||| ||||||||||||||||||||    
T  52731008 ccatccttactatcaacatgtccagcatcatga 52731040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 18079450 - 18079345
Alignment:
Q  16 attttacccataactaaaatttgagaattacacaacttgctctaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18079450 attttacccataactaaaatttgagaattacacaacttgccctaatggatagaatatttataaatacctctggtcttaaatatttaaagtaaacgtgata 18079351  T
Q  116 taactc 121  Q
    ||||||    
T  18079350 taactc 18079345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 44520551 - 44520656
Alignment:
Q  16 attttacccataactaaaatttgagaattacacaacttgctctaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 115  Q
    |||||| |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  44520551 attttatccataattaaaatttgagaattacacaacttgccctaattgatagaatatttataaatacctccggtcttaaatatttatagtaaacatgata 44520650  T
Q  116 taactc 121  Q
    ||||||    
T  44520651 taactc 44520656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 18079280 - 18079233
Alignment:
Q  192 tcagacttaacaaaatataatgtgagacatgatcaatggtcatggtaa 239  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  18079280 tcagacttaacaaaatataacgtgagacatgatcaatggtcatggtaa 18079233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 44520726 - 44520772
Alignment:
Q  192 tcagacttaacaaaatataatgtgagacatgatcaatggtcatggtaa 239  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||    
T  44520726 tcagacttaacaaaatataacgt-agacatgatcaatggtcatggtaa 44520772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 44520855 - 44520887
Alignment:
Q  318 ccatccttactaccaacatgtccagcatcatga 350  Q
    |||||||||||||||||||||||||||||||||    
T  44520855 ccatccttactaccaacatgtccagcatcatga 44520887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 33685570 - 33685465
Alignment:
Q  16 attttacccataactaaaatttgagaattacacaacttgctctaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33685570 attttacccataactaaaatttgagaattacacaacttgccctaatggatataatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 33685471  T
Q  116 taactc 121  Q
    ||||||    
T  33685470 taactc 33685465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 33685396 - 33685351
Alignment:
Q  194 agacttaacaaaatataatgtgagacatgatcaatggtcatggtaa 239  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  33685396 agacttaacaaaatataacgtgagacatgatcaatggtcatggtaa 33685351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 33685277 - 33685240
Alignment:
Q  313 cattaccatccttactaccaacatgtccagcatcatga 350  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33685277 cattaccatccttactaccaacatgtccagcatcatga 33685240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 34905110 - 34905005
Alignment:
Q  16 attttacccataactaaaatttgagaattacacaacttgctctaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905110 attttacccataactaaaatttgagaattacacaacttgccctaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 34905011  T
Q  116 taactc 121  Q
    | ||||    
T  34905010 ttactc 34905005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 7602735 - 7602631
Alignment:
Q  16 attttacccataactaaaatttgagaattacacaacttgctctaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7602735 attttacccataactaaaatttgagaattacacaacttgccctaatggatagaatatttataaataccttcggtcttaaatatttaaagtaaacgtgata 7602636  T
Q  116 taact 120  Q
    |||||    
T  7602635 taact 7602631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 7602562 - 7602515
Alignment:
Q  192 tcagacttaacaaaatataatgtgagacatgatcaatggtcatggtaa 239  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  7602562 tcagacttaacaaaatataacgtgagacatgatcaatggtcatggtaa 7602515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 34904929 - 34904890
Alignment:
Q  200 aacaaaatataatgtgagacatgatcaatggtcatggtaa 239  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  34904929 aacaaaatataacgtgagacatgatcaatggtcatggtaa 34904890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 34904806 - 34904774
Alignment:
Q  318 ccatccttactaccaacatgtccagcatcatga 350  Q
    |||||||||||||||||||||||||||||||||    
T  34904806 ccatccttactaccaacatgtccagcatcatga 34904774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 19209425 - 19209530
Alignment:
Q  16 attttacccataactaaaatttgagaattacacaacttgctctaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 115  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19209425 attttacccataactaaaatttgagaattacacaacttgccttaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 19209524  T
Q  116 taactc 121  Q
    ||||||    
T  19209525 taactc 19209530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 19209595 - 19209642
Alignment:
Q  192 tcagacttaacaaaatataatgtgagacatgatcaatggtcatggtaa 239  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  19209595 tcagacttaacaaaatataacgtgagacatgatcaatggtcatggtaa 19209642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 54534271 - 54534166
Alignment:
Q  16 attttacccataactaaaatttgagaattacacaacttgctctaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgtgata 115  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  54534271 attttacccataactaaaatttgagaattacacaacttgccttaatggatagaatatttataaatacctccggtcttaaatatttaaagtaaacgttata 54534172  T
Q  116 taactc 121  Q
    ||||||    
T  54534171 taactc 54534166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 54534101 - 54534056
Alignment:
Q  192 tcagacttaacaaaatataatgtgagacatgatcaatggtcatggt 237  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  54534101 tcagacttaacaaaatataacgtgagacatgatcaatggtcatggt 54534056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 9980042 - 9980120
Alignment:
Q  25 ataactaaaatttgagaattacacaacttgctctaatggatagaatatttataaatacctccggtcttaaatatttaaa 103  Q
    |||| ||||||||||||| |||||||||||| ||||||||| | ||||| |  |||||| ||  |||||||| ||||||    
T  9980042 ataattaaaatttgagaactacacaacttgccctaatggattgcatattgaataatacccccaatcttaaatgtttaaa 9980120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 54533971 - 54533939
Alignment:
Q  318 ccatccttactaccaacatgtccagcatcatga 350  Q
    |||||||||||| ||||||||||||||||||||    
T  54533971 ccatccttactatcaacatgtccagcatcatga 54533939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University