View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3596_low_8 (Length: 283)
Name: NF3596_low_8
Description: NF3596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3596_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 43582683 - 43582431
Alignment:
| Q |
18 |
attaattcatatgcatttgaggctttattcagatttgaacaagtcaaaatttattaaggcaccaccaagaagcataagatatacctactaccagcaagct |
117 |
Q |
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| T |
43582683 |
attaattcatatgcatttgaggctttattcagatttgaacaagtcaaaatttattaaggcaccaccaagaagcataagatatatatactaccagcaagct |
43582584 |
T |
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| Q |
118 |
gaaaatccaaacataacatcagttcttagattagataccataatgccttagtaaatgttgcataacaaagtgccccatccaattgagtcataagagcata |
217 |
Q |
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| T |
43582583 |
gaaaatccaaacataacatcagttcttagattagataccataatgccttagtaaatgttgcataacaaagtgccccatcaaattgagtcataagagcata |
43582484 |
T |
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| Q |
218 |
tttattcggtgacagtagcaacatgtgtactttccataccatttcctttgcta |
270 |
Q |
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| T |
43582483 |
tttatccggtgacagtagcaacatgtgtactttccataccatttcctttgcta |
43582431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 43550384 - 43550454
Alignment:
| Q |
132 |
aacatcagttcttagattagataccataatgccttagtaaatgttgcataacaaagtgccccatccaattg |
202 |
Q |
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| T |
43550384 |
aacaccagttcttagagtagataccacaaagccttattaaacgtttcataacaaagtgccccatccaattg |
43550454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 50897899 - 50897946
Alignment:
| Q |
52 |
ttgaacaagtcaaaatttattaaggcaccaccaagaagcataagatat |
99 |
Q |
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| T |
50897899 |
ttgaacaagcaaaaatttattaaggcaccaccatgatgcataagatat |
50897946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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