View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3597_high_1 (Length: 891)

Name: NF3597_high_1
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3597_high_1
NF3597_high_1
[»] chr3 (9 HSPs)
chr3 (16-631)||(40481796-40482400)
chr3 (692-884)||(40482502-40482694)
chr3 (556-682)||(40492783-40492913)
chr3 (308-483)||(40492526-40492699)
chr3 (654-695)||(40482396-40482437)
chr3 (204-249)||(33239898-33239943)
chr3 (511-555)||(40492708-40492752)
chr3 (742-774)||(40494070-40494102)
chr3 (128-186)||(20144630-20144688)
[»] chr1 (2 HSPs)
chr1 (206-300)||(10297245-10297339)
chr1 (218-279)||(23956406-23956467)
[»] chr8 (1 HSPs)
chr8 (218-279)||(14319863-14319924)
[»] chr4 (1 HSPs)
chr4 (218-279)||(19130845-19130906)
[»] chr7 (1 HSPs)
chr7 (218-279)||(13562268-13562329)
[»] chr5 (1 HSPs)
chr5 (197-279)||(21926651-21926733)
[»] chr2 (1 HSPs)
chr2 (204-249)||(15481143-15481188)


Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 16 - 631
Target Start/End: Original strand, 40481796 - 40482400
Alignment:
Q  16 cagaaagtgtcaatatatacagtaataattacttagggaaattattgcaagctagctgccatattgctttgtaaaagccttgccgtatgatagttaattc 115  Q
    |||||||||||||||||||     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40481796 cagaaagtgtcaatatata-----ataattacttagggaaattattacaagctagctgccatattgctttgtaaaagccttgccgtataatagttaattc 40481890  T
Q  116 attacaacgatcatttaataatgataacatgttttttgaggaacattttcttcggtatttaactt-agaaaaagattctaaaatgtgtttaccgaggaaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| |  |||  ||| |||    
T  40481891 attacaacgatcatttaataatgataacatgttttttgaggaacattttcttcgatatttaacttgaaaaaaagattctaaaatatacttattgagaaaa 40481990  T
Q  215 aagttcctcgaaaaaccttaattttagcgagaaactatggttcctctgaaatttttggtcggaatcctcgagctttcttgtagtgtatatgattgtggtt 314  Q
    |||||||||||||||||||||||||||| |||||| ||| ||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40481991 aagttcctcgaaaaaccttaattttagcaagaaacaatgattcttctaaattttttggtcggaatcctcgagctttcttgtagtgtatatgattgtggtt 40482090  T
Q  315 attctggtcatttaggagtttagggcatttaataacatcagttaaattaaagataaaagtgactaatcatgacttgaagttttgaaaccccacccgactc 414  Q
    |||||||||||||||||||||||||||||||||||||||||     ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  40482091 attctggtcatttaggagtttagggcatttaataacatcag-----ttaaagataaaagtggctaatcatgacttgaagttttgaaaccccacccgagtc 40482185  T
Q  415 attgcttatacaatcaatttgtctttaaactatcacattttcatcaatttaatccctaaactaataaaatcaacaaaaaatgnnnnnnnnnnnaagaaca 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  40482186 attgcttatacaatcaatttgtctttaaactatcacattttcatcaatttaatccctaaactaataaaatcaacaaaaaatg--ttttttcttaagaaca 40482283  T
Q  515 aaaaaggttcttaaattatagaaatggcatcaacggcggtagttcgttcaatagttgcttgactctagctcacacgacacttgtaagtcaatgacctcaa 614  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40482284 aaaaaggttcttaaattatagaaatggcatcaacggaggtagttcgttcaatagttgcttgactctagctcacacgacacttgtaagtcaatgatctcaa 40482383  T
Q  615 atttgatattttgttac 631  Q
    |||||||||||||||||    
T  40482384 atttgatattttgttac 40482400  T

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Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 692 - 884
Target Start/End: Original strand, 40482502 - 40482694
Alignment:
Q  692 agtatttaaccccaagcaccttccaagaaatatatcatgtgtgaagtaaagtggtcgtttgtaatttgtattgtaataccttccacactatccacagtac 791  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40482502 agtatttaaccccaagcaccttccaagaaatatatcatgtgtgaagtaaagtggtcgtttgtaatttgtattgtaataccttccacactatccacagtac 40482601  T
Q  792 aaaatatactcaatgcatttttgtggttatacttttatcgttactttcagacctgatcacctaaattggaacccatgaatgaaacttcatttc 884  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40482602 aaaatatactcaatgtatttttgtggttatacttttatcgttactctcagacctgatcacctaaattggaacccatgaatgaaacttcatttc 40482694  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 556 - 682
Target Start/End: Original strand, 40492783 - 40492913
Alignment:
Q  556 gttcgttcaatagttgcttgactctagctcacacgacacttgtaagtcaatgacctc-aaatttgatattttgttactatgaatttatccaatataaaa- 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||  || |||||||||||||| ||||  |||||| |||||||||||||     
T  40492783 gttcgttcaatagttgcttgactctagctcacacgacacttgtaagtctacgatgtcaaaatttgatattttattacactgaattcatccaatataaaaa 40492882  T
Q  654 --gttacgaaaacataaaactaattaagtat 682  Q
       ||| ||||||||||||| ||||||||||    
T  40492883 attttaagaaaacataaaacgaattaagtat 40492913  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 308 - 483
Target Start/End: Original strand, 40492526 - 40492699
Alignment:
Q  308 tgtggttattctggtcatttaggagtttagggcatttaataacatcagttaaattaaagataaaag-tgactaatcatgacttgaagttttgaaacccca 406  Q
    ||||||||||  ||||||||||||||| ||||||||||| |||| | ||||||     |||||||| ||  ||||||| ||||||||||||||| |  ||    
T  40492526 tgtggttatttcggtcatttaggagttcagggcatttaacaacaaccgttaaa-----gataaaagatg--taatcataacttgaagttttgaacctgca 40492618  T
Q  407 cccgactcattgcttatacaa-tcaatttgtctttaaacta---tcacattttcatcaatttaatccctaaactaataaaa 483  Q
       || | ||||||||||||| |||||||||||||||||||   ||||| ||| ||||||||||||| |||||||||||||    
T  40492619 gttgaataattgcttatacaaatcaatttgtctttaaactactatcacactttgatcaatttaatccataaactaataaaa 40492699  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 654 - 695
Target Start/End: Original strand, 40482396 - 40482437
Alignment:
Q  654 gttacgaaaacataaaactaattaagtatgtaaaaaatagta 695  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40482396 gttacgaaaacataaaactaattaagtatgtaaaaaatagta 40482437  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 33239898 - 33239943
Alignment:
Q  204 taccgaggaaaaagttcctcgaaaaaccttaattttagcgagaaac 249  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||    
T  33239898 taccgaggaaatagttcctcggaaaacctttattttagcgagaaac 33239943  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 511 - 555
Target Start/End: Original strand, 40492708 - 40492752
Alignment:
Q  511 aacaaaaaaggttcttaaattatagaaatggcatcaacggcggta 555  Q
    |||||||||||||||| |||||||||||| |||||||||| ||||    
T  40492708 aacaaaaaaggttcttcaattatagaaattgcatcaacggtggta 40492752  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 742 - 774
Target Start/End: Original strand, 40494070 - 40494102
Alignment:
Q  742 gtggtcgtttgtaatttgtattgtaataccttc 774  Q
    |||||||||||||||||||||||||||||||||    
T  40494070 gtggtcgtttgtaatttgtattgtaataccttc 40494102  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 20144688 - 20144630
Alignment:
Q  128 atttaataatgataacatgttttttgaggaacattttcttcggtatttaacttagaaaa 186  Q
    |||| ||||||| ||||||||||  ||||||| ||||| |||||||||||||| |||||    
T  20144688 attttataatgaaaacatgttttccgaggaaccttttcctcggtatttaacttggaaaa 20144630  T

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Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 10297245 - 10297339
Alignment:
Q  206 ccgaggaaaaagttcctcgaaaaaccttaattttagcgagaaactatggttcctctgaaatttttggtcggaatcctcgagctttcttgtagtgt 300  Q
    ||||||||||||||| ||  ||| |||||||||||||||||||| || ||||||| |||||||||| ||||||| ||| ||||||||||||||||    
T  10297245 ccgaggaaaaagttcatcagaaatccttaattttagcgagaaaccattgttcctcggaaatttttgatcggaatactctagctttcttgtagtgt 10297339  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 23956467 - 23956406
Alignment:
Q  218 ttcctcgaaaaaccttaattttagcgagaaactatggttcctctgaaatttttggtcggaat 279  Q
    ||||||| |||||||| ||||| ||||||||| ||| |||||| ||||||||||||||||||    
T  23956467 ttcctcggaaaacctttatttttgcgagaaaccatgcttcctcggaaatttttggtcggaat 23956406  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 14319924 - 14319863
Alignment:
Q  218 ttcctcgaaaaaccttaattttagcgagaaactatggttcctctgaaatttttggtcggaat 279  Q
    |||||||||||||||| ||||| ||||||||| ||| |||||| ||||||||||||||||||    
T  14319924 ttcctcgaaaaacctttatttttgcgagaaaccatgcttcctcggaaatttttggtcggaat 14319863  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 19130906 - 19130845
Alignment:
Q  218 ttcctcgaaaaaccttaattttagcgagaaactatggttcctctgaaatttttggtcggaat 279  Q
    |||||||||||| ||| ||||| ||||||||| ||| |||||| ||||||||||||||||||    
T  19130906 ttcctcgaaaaaactttatttttgcgagaaaccatgcttcctcggaaatttttggtcggaat 19130845  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 13562329 - 13562268
Alignment:
Q  218 ttcctcgaaaaaccttaattttagcgagaaactatggttcctctgaaatttttggtcggaat 279  Q
    ||||||| |||||||| ||||| ||||||||| ||| |||| | ||||||||||||||||||    
T  13562329 ttcctcggaaaacctttatttttgcgagaaaccatgcttccgcagaaatttttggtcggaat 13562268  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 21926651 - 21926733
Alignment:
Q  197 atgtgtttaccgaggaaaaagttcctcgaaaa-accttaattttagcgagaaactatggttcctctgaaatttttggtcggaat 279  Q
    |||||| |||||||||||||||| |||| ||  ||||  |||| |||||||||| |||||||||| ||| ||||||||||||||    
T  21926651 atgtgtgtaccgaggaaaaagttgctcggaattacctctattt-agcgagaaacaatggttcctcggaattttttggtcggaat 21926733  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 15481143 - 15481188
Alignment:
Q  204 taccgaggaaaaagttcctcgaaaaaccttaattttagcgagaaac 249  Q
    |||||||||||  ||| ||||||||||||| |||||||||||||||    
T  15481143 taccgaggaaattgttactcgaaaaacctttattttagcgagaaac 15481188  T

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