View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3597_high_12 (Length: 280)
Name: NF3597_high_12
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3597_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 2213191 - 2213441
Alignment:
| Q |
18 |
ccaactttgtccacatcttcccgggtctgatttgtactcttctaacctccttttcatttacctatcctattaacccattccaacacaatacatctgtttt |
117 |
Q |
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||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2213191 |
ccaactttgtccacaccttcccggatccgatttgtactcttctaacctccttttcatttacctatcctattaacccattccaacacaatacatctgtttt |
2213290 |
T |
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| Q |
118 |
tcaactgtccttcccttacctctcctagaatacacttttaatgccctctctccttaatacaatacattcactctgtttgttgcagattatggtaatattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2213291 |
tcaactgtccttcccttacctctcctagaatacacttttaatgccctctctccttaatacaatacattcactc----tgttgcagattatggtaatattt |
2213386 |
T |
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| Q |
218 |
g--nnnnnnnnnnnnggttttatacccgttcttatttatttctttgtctcctatg |
270 |
Q |
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| T |
2213387 |
gttttttttttttttggttttatacccgttcttatttatttctttgtctcctatg |
2213441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 2200541 - 2200784
Alignment:
| Q |
18 |
ccaactttgtccacatcttcccgggtctgatttgtactcttctaacctccttttcatttacctatcctattaacccattccaacacaatacatctgtttt |
117 |
Q |
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||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |
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| T |
2200541 |
ccaactttgtctacaccttccaggatctgatttgtactcttctaacctccttttcatttacctatcctattaactggttcctacac--tacatctgtttt |
2200638 |
T |
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| Q |
118 |
tcaactgtccttcccttacctctcctagaatacacttttaatgccctctctccttaatacaatacattcactctgtttgttgcagattatggtaatattt |
217 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
2200639 |
ccaactgtccttctcttacctctcctagaatatacttttaatgccctctctccttaatacaatacactcactctgtttgttgcggattatggtaatattt |
2200738 |
T |
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| Q |
218 |
gnnnnnnnnnnnnggttttatacccgttcttatttatttctttgtct |
264 |
Q |
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| T |
2200739 |
g-tttttttttttggttttatacccgttcttatttatttctatgtct |
2200784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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