View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3597_high_21 (Length: 234)
Name: NF3597_high_21
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3597_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 2988461 - 2988617
Alignment:
| Q |
14 |
aatataactctatcaaatatgtaatcaaaggtctatctgcgcatgtcagtcctatatggtgatttcctaaagtttagtttcaaagtatacaataacatct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2988461 |
aatataactctatcaaatatgtaatcaaaggtctatctgcgcatgtcagtcctatatggtgatttcctaaagtttagtttcaaagcatacaataacatct |
2988560 |
T |
|
| Q |
114 |
ttctatcatatgcttgatcatggaagatgcagttacatcataggaaaggaatttgag |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2988561 |
ttctatcatatgcttgatcatggaagatgcagttacatcataagaaaggaatttgag |
2988617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 45115917 - 45115761
Alignment:
| Q |
14 |
aatataactctatcaaatatgtaatcaaaggtctatctgcgcatgtcagtcctatatggtgatttcctaaagtttagtttcaaagtatacaataacatct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45115917 |
aatataactctatcaaatatgtaatcaaaggtctatctgcgcatgtcagtcctatatggtgatttcctaaagtttagtttcaaagcatacaataacatct |
45115818 |
T |
|
| Q |
114 |
ttctatcatatgcttgatcatggaagatgcagttacatcataggaaaggaatttgag |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45115817 |
ttctatcatatgcttgatcatggaagatgcagttacatcataagaaaggaatttgag |
45115761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 26723719 - 26723875
Alignment:
| Q |
14 |
aatataactctatcaaatatgtaatcaaaggtctatctgcgcatgtcagtcctatatggtgatttcctaaagtttagtttcaaagtatacaataacatct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26723719 |
aatataactctatcaaatatgtaatcaaaggtctatctgcgcatgtcagtcctatatggtgatttcctaaagtttagtttcaaagcatacaataacatct |
26723818 |
T |
|
| Q |
114 |
ttctatcatatgcttgatcatggaagatgcagttacatcataggaaaggaatttgag |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
26723819 |
ttctatcatatgcttgatcatggaagatgcagttacatcataagaaaagaatttgag |
26723875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University